Top 10 genes with highest correlation to Rv1731/gabD2:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1070c/echA8 | (cc=0.7318) | info on Rv1070c/echA8 |
| Rv3395c/- | (cc=0.6483) | info on Rv3395c/- |
| Rv2474c/- | (cc=0.6371) | info on Rv2474c/- |
| Rv1181/pks4 | (cc=0.6338) | info on Rv1181/pks4 |
| Rv3136A/- | (cc=0.6317) | info on Rv3136A/- |
| Rv3354/- | (cc=0.6304) | info on Rv3354/- |
| Rv1323/fadA4 | (cc=0.6254) | info on Rv1323/fadA4 |
| Rv2633c/- | (cc=0.6249) | info on Rv2633c/- |
| Rv2028c/- | (cc=0.6128) | info on Rv2028c/- |
| Rv2708c/- | (cc=0.6028) | info on Rv2708c/- |
Correlation of Rv1731/gabD2 with Rv2633c/-
Normalized LFCs for Rv1731/gabD2:
(description and provenance of datasets)
| Rv1731/gabD2 | Rv2633c/- | |
| Fe_supp_jason_reseq | 1.414 | -0.311 |
| low_pH_jason_reseq | -0.234 | -1.37 |
| NO_jason_reseq | -0.496 | 1.982 |
| B6_jason_reseq | 0.968 | 2.097 |
| MHCII_jason_reseq | 0.922 | 2.688 |
| Isoniazid02 | 2.222 | -1.835 |
| Rifampicin4 | 0.612 | 0.788 |
| Ethambutol3 | 1.846 | -1.015 |
| Meropenem3 | 0.787 | 1.543 |
| Vancomycin16 | 0.485 | 0.992 |
| Rv2680_day32 | -0.77 | -1.492 |
| H37Rv_KO_MarP | 0.976 | -0.251 |
| hypoxia_3wks | -0.311 | -1.635 |
| hypoxia_6wks | -0.762 | -0.935 |
| glycerol | 0.143 | -3.439 |
| cholesterol | 0.103 | -1.698 |
| AJ | -0.844 | -1.847 |
| Bibs02 | -0.906 | -2.015 |
| Bibs02c | -0.126 | -1.479 |
| BL6 | -0.135 | -4.097 |
| BL6a | -0.679 | -2.705 |
| BXD01 | -0.878 | -3.305 |
| BXD010 | -0.388 | -2.545 |
| BXD011 | -0.631 | -3.454 |
| BXD03 | -1.159 | -4.022 |
| BXD04 | -0.293 | -3.05 |
| BXD05 | -0.531 | -3.466 |
| BXD06 | -0.527 | -3.175 |
| BXD07 | -0.787 | -3.925 |
| BXD08 | -0.512 | -3.425 |
| BXD09 | -0.89 | -3.938 |
| CAST | -0.609 | -1.121 |
| CCcont | -0.868 | -3.226 |
| DS01 | -0.313 | -2.479 |
| DS02 | -0.098 | -2.478 |
| DS04 | -0.257 | -1.739 |
| DS0c | -0.456 | -3.309 |
| GP01 | -0.752 | -2.635 |
| GP02 | -1.025 | -2.268 |
| GP0c | -1.226 | -3.348 |
| NOD | -0.392 | -0.823 |
| NZO | -0.247 | -1.331 |
| PWK | 0.098 | -1.07 |
| H37Rv_KO_CtpC | -1.118 | -4.742 |
| H37Rv_KO_CtpD | -1.473 | -1.586 |
| H37Rv_KO_Rv1272 | -0.469 | -3.011 |
| H37Rv_KO_SugABC | 0.11 | -1.628 |
| H37Rv_KO_MbtN | -0.511 | -2.419 |
| Trans05 | -1.015 | -2.951 |
| macrophage_unactivated | -1.117 | -5.293 |
| IL1 | -1.272 | -4.974 |
| Rapamycin | -0.365 | -5.146 |
| Tcell | -1.153 | -4.558 |
| GMCSF | -0.481 | -4.605 |
| IFNab | -1.182 | -6.0 |
| IFNg | -0.195 | -4.145 |
| IFNg_GMCSF1 | -1.471 | -4.452 |
| Rv1432_day32 | -0.086 | -1.082 |
| Rv1565c_day32 | 0.305 | -0.234 |
| secA2_input | -0.916 | -0.355 |
| delta_Rv3594 | -0.028 | 0.136 |
| delta_Rv3717 | -0.068 | -1.179 |
| delta_Rv3811 | 0.315 | -0.013 |
| delta_Rv0954 | 1.269 | 0.286 |
| PonA1 | 0.173 | 0.524 |
| EccD1_KO | 0.355 | -0.987 |
| EspI_KO | -0.108 | -0.337 |
| PE35_KO | 0.703 | 0.435 |
| PPE68_KO | 0.771 | 0.701 |
| glycerol2 | 0.398 | 2.304 |
| lignocerate | 1.058 | 2.288 |
| oleate | -0.679 | 1.324 |
| phosphatidylcholine | 0.73 | 6.0 |
| acetate | 0.938 | 1.057 |
| glucAc | 0.898 | 0.245 |
| Rv0950ko | 0.332 | -1.291 |
| Rv1096ko | 1.062 | -1.846 |
| Rv3684ko | 0.694 | -0.55 |
| delta_otsA_trehalose | 0.492 | -0.497 |