Top 10 genes with highest correlation to Rv1710/scpB:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1167c/- | (cc=0.5279) | info on Rv1167c/- |
| Rv1575/- | (cc=0.5044) | info on Rv1575/- |
| Rv1633/uvrB | (cc=0.5043) | info on Rv1633/uvrB |
| Rv1709/scpA | (cc=0.5023) | info on Rv1709/scpA |
| Rv3161c/- | (cc=0.4701) | info on Rv3161c/- |
| Rv3232c/ppk2 | (cc=0.4674) | info on Rv3232c/ppk2 |
| Rv3108/- | (cc=0.4659) | info on Rv3108/- |
| Rv1116/- | (cc=0.4644) | info on Rv1116/- |
| Rv1456c/- | (cc=0.4584) | info on Rv1456c/- |
| Rv3720/- | (cc=0.4577) | info on Rv3720/- |
Correlation of Rv1710/scpB with Rv3108/-
Normalized LFCs for Rv1710/scpB:
(description and provenance of datasets)
| Rv1710/scpB | Rv3108/- | |
| Fe_supp_jason_reseq | -0.546 | -1.688 |
| low_pH_jason_reseq | -0.649 | -0.527 |
| NO_jason_reseq | 1.796 | -1.449 |
| B6_jason_reseq | -0.741 | -3.642 |
| MHCII_jason_reseq | -0.785 | -3.207 |
| Isoniazid02 | -1.228 | -2.722 |
| Rifampicin4 | 0.097 | 0.143 |
| Ethambutol3 | -0.483 | -2.754 |
| Meropenem3 | -0.722 | -2.074 |
| Vancomycin16 | -0.929 | -0.804 |
| Rv2680_day32 | -1.19 | 1.988 |
| H37Rv_KO_MarP | -1.067 | -0.974 |
| hypoxia_3wks | -1.284 | -1.232 |
| hypoxia_6wks | -1.927 | -1.142 |
| glycerol | 0.945 | -0.781 |
| cholesterol | 0.947 | 4.538 |
| AJ | -1.119 | -1.356 |
| Bibs02 | -0.578 | -2.742 |
| Bibs02c | 0.756 | -1.516 |
| BL6 | 1.783 | 0.031 |
| BL6a | 0.748 | 0.595 |
| BXD01 | 0.683 | 0.96 |
| BXD010 | 0.822 | 0.361 |
| BXD011 | 0.163 | 0.258 |
| BXD03 | 1.652 | 2.155 |
| BXD04 | 0.579 | 1.291 |
| BXD05 | 1.147 | 0.065 |
| BXD06 | 0.921 | 0.588 |
| BXD07 | 0.872 | 0.467 |
| BXD08 | 0.804 | -0.214 |
| BXD09 | 0.794 | 0.619 |
| CAST | -0.591 | -0.179 |
| CCcont | -0.34 | 0.037 |
| DS01 | 0.737 | -1.487 |
| DS02 | 0.0 | -1.47 |
| DS04 | -0.498 | -0.551 |
| DS0c | 0.853 | 0.105 |
| GP01 | -0.17 | -1.481 |
| GP02 | 0.0 | -1.165 |
| GP0c | -0.091 | -1.95 |
| NOD | -1.432 | -0.869 |
| NZO | -0.757 | -2.146 |
| PWK | -1.708 | -0.831 |
| H37Rv_KO_CtpC | 1.803 | 0.079 |
| H37Rv_KO_CtpD | 0.187 | 2.216 |
| H37Rv_KO_Rv1272 | 0.208 | -0.447 |
| H37Rv_KO_SugABC | -0.225 | 0.614 |
| H37Rv_KO_MbtN | 0.686 | 1.659 |
| Trans05 | 2.57 | -0.415 |
| macrophage_unactivated | -0.082 | -1.121 |
| IL1 | 0.359 | 0.908 |
| Rapamycin | 0.227 | -0.335 |
| Tcell | 0.319 | 1.329 |
| GMCSF | 0.319 | -0.766 |
| IFNab | 0.895 | 1.113 |
| IFNg | -1.366 | 0.462 |
| IFNg_GMCSF1 | 0.93 | -0.167 |
| Rv1432_day32 | -1.026 | 0.18 |
| Rv1565c_day32 | 0.739 | 0.637 |
| secA2_input | 0.537 | 2.052 |
| delta_Rv3594 | 0.353 | -0.133 |
| delta_Rv3717 | 0.311 | 1.051 |
| delta_Rv3811 | -0.375 | 1.194 |
| delta_Rv0954 | -1.081 | -2.16 |
| PonA1 | 0.044 | 0.404 |
| EccD1_KO | 1.783 | 2.361 |
| EspI_KO | 1.395 | -0.134 |
| PE35_KO | 0.805 | 2.094 |
| PPE68_KO | 1.328 | 1.51 |
| glycerol2 | -0.886 | -2.413 |
| lignocerate | -0.309 | -1.218 |
| oleate | -0.948 | -0.301 |
| phosphatidylcholine | -0.279 | -1.401 |
| acetate | -1.051 | -1.662 |
| glucAc | -0.617 | -1.572 |
| Rv0950ko | 0.06 | 0.259 |
| Rv1096ko | 0.181 | 1.674 |
| Rv3684ko | -0.275 | 0.19 |
| delta_otsA_trehalose | 0.378 | -0.599 |