Top 10 genes with highest correlation to Rv1710/scpB:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1167c/- | (cc=0.5279) | info on Rv1167c/- |
| Rv1575/- | (cc=0.5044) | info on Rv1575/- |
| Rv1633/uvrB | (cc=0.5043) | info on Rv1633/uvrB |
| Rv1709/scpA | (cc=0.5023) | info on Rv1709/scpA |
| Rv3161c/- | (cc=0.4701) | info on Rv3161c/- |
| Rv3232c/ppk2 | (cc=0.4674) | info on Rv3232c/ppk2 |
| Rv3108/- | (cc=0.4659) | info on Rv3108/- |
| Rv1116/- | (cc=0.4644) | info on Rv1116/- |
| Rv1456c/- | (cc=0.4584) | info on Rv1456c/- |
| Rv3720/- | (cc=0.4577) | info on Rv3720/- |
Correlation of Rv1710/scpB with Rv1709/scpA
Normalized LFCs for Rv1710/scpB:
(description and provenance of datasets)
| Rv1710/scpB | Rv1709/scpA | |
| Fe_supp_jason_reseq | -0.546 | -0.865 |
| low_pH_jason_reseq | -0.649 | -0.718 |
| NO_jason_reseq | 1.796 | 1.019 |
| B6_jason_reseq | -0.741 | 0.047 |
| MHCII_jason_reseq | -0.785 | -0.021 |
| Isoniazid02 | -1.228 | -1.224 |
| Rifampicin4 | 0.097 | -0.544 |
| Ethambutol3 | -0.483 | -1.285 |
| Meropenem3 | -0.722 | 0.486 |
| Vancomycin16 | -0.929 | -2.141 |
| Rv2680_day32 | -1.19 | -0.462 |
| H37Rv_KO_MarP | -1.067 | -0.696 |
| hypoxia_3wks | -1.284 | -0.542 |
| hypoxia_6wks | -1.927 | 0.067 |
| glycerol | 0.945 | -0.484 |
| cholesterol | 0.947 | 0.426 |
| AJ | -1.119 | 0.499 |
| Bibs02 | -0.578 | -0.22 |
| Bibs02c | 0.756 | 1.047 |
| BL6 | 1.783 | 0.693 |
| BL6a | 0.748 | 1.28 |
| BXD01 | 0.683 | 0.546 |
| BXD010 | 0.822 | 1.171 |
| BXD011 | 0.163 | 0.657 |
| BXD03 | 1.652 | 0.176 |
| BXD04 | 0.579 | 0.739 |
| BXD05 | 1.147 | 0.641 |
| BXD06 | 0.921 | 0.844 |
| BXD07 | 0.872 | 0.484 |
| BXD08 | 0.804 | 0.592 |
| BXD09 | 0.794 | 0.703 |
| CAST | -0.591 | 0.085 |
| CCcont | -0.34 | 0.055 |
| DS01 | 0.737 | 0.604 |
| DS02 | 0.0 | -0.055 |
| DS04 | -0.498 | 0.398 |
| DS0c | 0.853 | 1.281 |
| GP01 | -0.17 | 0.252 |
| GP02 | 0.0 | -0.572 |
| GP0c | -0.091 | 0.239 |
| NOD | -1.432 | 0.164 |
| NZO | -0.757 | -1.016 |
| PWK | -1.708 | 1.101 |
| H37Rv_KO_CtpC | 1.803 | 1.333 |
| H37Rv_KO_CtpD | 0.187 | 1.511 |
| H37Rv_KO_Rv1272 | 0.208 | 0.592 |
| H37Rv_KO_SugABC | -0.225 | -0.302 |
| H37Rv_KO_MbtN | 0.686 | -0.814 |
| Trans05 | 2.57 | 0.905 |
| macrophage_unactivated | -0.082 | -0.691 |
| IL1 | 0.359 | -0.24 |
| Rapamycin | 0.227 | -1.007 |
| Tcell | 0.319 | -0.505 |
| GMCSF | 0.319 | 0.528 |
| IFNab | 0.895 | -0.741 |
| IFNg | -1.366 | 0.176 |
| IFNg_GMCSF1 | 0.93 | -1.119 |
| Rv1432_day32 | -1.026 | -1.64 |
| Rv1565c_day32 | 0.739 | 1.041 |
| secA2_input | 0.537 | 0.366 |
| delta_Rv3594 | 0.353 | -0.268 |
| delta_Rv3717 | 0.311 | 0.44 |
| delta_Rv3811 | -0.375 | -0.135 |
| delta_Rv0954 | -1.081 | -1.833 |
| PonA1 | 0.044 | 0.443 |
| EccD1_KO | 1.783 | 1.01 |
| EspI_KO | 1.395 | 1.928 |
| PE35_KO | 0.805 | 0.753 |
| PPE68_KO | 1.328 | 0.454 |
| glycerol2 | -0.886 | -1.681 |
| lignocerate | -0.309 | -2.151 |
| oleate | -0.948 | -1.701 |
| phosphatidylcholine | -0.279 | -2.105 |
| acetate | -1.051 | -1.132 |
| glucAc | -0.617 | -1.767 |
| Rv0950ko | 0.06 | -0.368 |
| Rv1096ko | 0.181 | 1.013 |
| Rv3684ko | -0.275 | 0.789 |
| delta_otsA_trehalose | 0.378 | -1.327 |