Top 10 genes with highest correlation to Rv1710/scpB:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1167c/- | (cc=0.5279) | info on Rv1167c/- |
| Rv1575/- | (cc=0.5044) | info on Rv1575/- |
| Rv1633/uvrB | (cc=0.5043) | info on Rv1633/uvrB |
| Rv1709/scpA | (cc=0.5023) | info on Rv1709/scpA |
| Rv3161c/- | (cc=0.4701) | info on Rv3161c/- |
| Rv3232c/ppk2 | (cc=0.4674) | info on Rv3232c/ppk2 |
| Rv3108/- | (cc=0.4659) | info on Rv3108/- |
| Rv1116/- | (cc=0.4644) | info on Rv1116/- |
| Rv1456c/- | (cc=0.4584) | info on Rv1456c/- |
| Rv3720/- | (cc=0.4577) | info on Rv3720/- |
Correlation of Rv1710/scpB with Rv1116/-
Normalized LFCs for Rv1710/scpB:
(description and provenance of datasets)
| Rv1710/scpB | Rv1116/- | |
| Fe_supp_jason_reseq | -0.546 | -0.079 |
| low_pH_jason_reseq | -0.649 | 1.563 |
| NO_jason_reseq | 1.796 | -0.937 |
| B6_jason_reseq | -0.741 | -0.775 |
| MHCII_jason_reseq | -0.785 | -2.185 |
| Isoniazid02 | -1.228 | -0.202 |
| Rifampicin4 | 0.097 | -0.793 |
| Ethambutol3 | -0.483 | -0.469 |
| Meropenem3 | -0.722 | -0.329 |
| Vancomycin16 | -0.929 | -0.544 |
| Rv2680_day32 | -1.19 | -3.002 |
| H37Rv_KO_MarP | -1.067 | 0.209 |
| hypoxia_3wks | -1.284 | 0.881 |
| hypoxia_6wks | -1.927 | 0.315 |
| glycerol | 0.945 | -2.319 |
| cholesterol | 0.947 | -1.265 |
| AJ | -1.119 | -0.866 |
| Bibs02 | -0.578 | -0.507 |
| Bibs02c | 0.756 | 1.479 |
| BL6 | 1.783 | 1.089 |
| BL6a | 0.748 | 3.068 |
| BXD01 | 0.683 | 1.975 |
| BXD010 | 0.822 | 3.315 |
| BXD011 | 0.163 | 2.491 |
| BXD03 | 1.652 | 2.737 |
| BXD04 | 0.579 | 2.569 |
| BXD05 | 1.147 | 2.73 |
| BXD06 | 0.921 | 2.452 |
| BXD07 | 0.872 | 2.972 |
| BXD08 | 0.804 | 2.685 |
| BXD09 | 0.794 | 2.084 |
| CAST | -0.591 | -0.859 |
| CCcont | -0.34 | 1.588 |
| DS01 | 0.737 | -0.352 |
| DS02 | 0.0 | -2.497 |
| DS04 | -0.498 | -1.405 |
| DS0c | 0.853 | -1.425 |
| GP01 | -0.17 | 2.097 |
| GP02 | 0.0 | -0.353 |
| GP0c | -0.091 | 2.178 |
| NOD | -1.432 | -0.623 |
| NZO | -0.757 | -2.29 |
| PWK | -1.708 | -1.563 |
| H37Rv_KO_CtpC | 1.803 | 3.593 |
| H37Rv_KO_CtpD | 0.187 | 1.121 |
| H37Rv_KO_Rv1272 | 0.208 | 1.482 |
| H37Rv_KO_SugABC | -0.225 | -0.321 |
| H37Rv_KO_MbtN | 0.686 | 1.349 |
| Trans05 | 2.57 | 1.761 |
| macrophage_unactivated | -0.082 | -1.727 |
| IL1 | 0.359 | -1.216 |
| Rapamycin | 0.227 | -0.414 |
| Tcell | 0.319 | -1.606 |
| GMCSF | 0.319 | -0.38 |
| IFNab | 0.895 | -0.46 |
| IFNg | -1.366 | -1.646 |
| IFNg_GMCSF1 | 0.93 | -0.723 |
| Rv1432_day32 | -1.026 | 0.0 |
| Rv1565c_day32 | 0.739 | -0.622 |
| secA2_input | 0.537 | 0.092 |
| delta_Rv3594 | 0.353 | -2.284 |
| delta_Rv3717 | 0.311 | -0.364 |
| delta_Rv3811 | -0.375 | 0.213 |
| delta_Rv0954 | -1.081 | -1.87 |
| PonA1 | 0.044 | -3.333 |
| EccD1_KO | 1.783 | 0.51 |
| EspI_KO | 1.395 | 1.934 |
| PE35_KO | 0.805 | 0.796 |
| PPE68_KO | 1.328 | 1.523 |
| glycerol2 | -0.886 | -1.516 |
| lignocerate | -0.309 | -1.445 |
| oleate | -0.948 | -0.045 |
| phosphatidylcholine | -0.279 | -0.403 |
| acetate | -1.051 | -1.837 |
| glucAc | -0.617 | -2.853 |
| Rv0950ko | 0.06 | 1.263 |
| Rv1096ko | 0.181 | 0.989 |
| Rv3684ko | -0.275 | 0.095 |
| delta_otsA_trehalose | 0.378 | 0.483 |