Top 10 genes with highest correlation to Rv1707/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0231/fadE4 | (cc=0.5246) | info on Rv0231/fadE4 |
| Rv0268c/- | (cc=0.4532) | info on Rv0268c/- |
| Rv0588/yrbE2B | (cc=0.4475) | info on Rv0588/yrbE2B |
| Rv3011c/gatA | (cc=0.4356) | info on Rv3011c/gatA |
| Rv3437/- | (cc=0.431) | info on Rv3437/- |
| Rv0145/- | (cc=0.4145) | info on Rv0145/- |
| Rv0905/echA6 | (cc=0.4125) | info on Rv0905/echA6 |
| Rv3675/- | (cc=0.4109) | info on Rv3675/- |
| Rv3435c/- | (cc=0.4075) | info on Rv3435c/- |
| Rv2594c/ruvC | (cc=0.4058) | info on Rv2594c/ruvC |
Correlation of Rv1707/- with Rv0905/echA6
Normalized LFCs for Rv1707/-:
(description and provenance of datasets)
| Rv1707/- | Rv0905/echA6 | |
| Fe_supp_jason_reseq | -0.251 | -2.259 |
| low_pH_jason_reseq | -0.564 | -0.49 |
| NO_jason_reseq | 1.901 | 1.657 |
| B6_jason_reseq | 0.21 | 1.222 |
| MHCII_jason_reseq | 0.458 | -0.433 |
| Isoniazid02 | -0.096 | 0.34 |
| Rifampicin4 | -2.166 | -3.111 |
| Ethambutol3 | -1.131 | -1.599 |
| Meropenem3 | -0.491 | 0.522 |
| Vancomycin16 | -2.258 | -3.396 |
| Rv2680_day32 | 0.083 | -0.351 |
| H37Rv_KO_MarP | 0.068 | 0.21 |
| hypoxia_3wks | -0.618 | -1.164 |
| hypoxia_6wks | -1.62 | 0.01 |
| glycerol | 0.102 | -1.148 |
| cholesterol | -0.959 | 0.277 |
| AJ | 1.298 | 0.729 |
| Bibs02 | 0.279 | 0.314 |
| Bibs02c | -0.103 | -0.506 |
| BL6 | -0.438 | 1.821 |
| BL6a | 0.29 | 1.036 |
| BXD01 | -0.284 | 1.479 |
| BXD010 | 0.559 | 1.386 |
| BXD011 | 0.498 | 1.455 |
| BXD03 | 0.15 | 1.735 |
| BXD04 | -0.051 | 1.832 |
| BXD05 | 0.339 | 1.43 |
| BXD06 | 0.083 | 2.109 |
| BXD07 | 0.287 | 1.615 |
| BXD08 | 0.203 | 0.967 |
| BXD09 | 0.441 | 2.253 |
| CAST | 0.574 | 1.021 |
| CCcont | -0.371 | -0.504 |
| DS01 | -0.493 | 0.07 |
| DS02 | -1.007 | -0.715 |
| DS04 | -0.32 | 0.091 |
| DS0c | -0.135 | 0.383 |
| GP01 | 0.307 | 0.73 |
| GP02 | 0.594 | -0.564 |
| GP0c | 0.076 | -0.166 |
| NOD | 0.28 | 0.106 |
| NZO | 0.655 | 0.796 |
| PWK | 0.988 | 2.299 |
| H37Rv_KO_CtpC | -0.625 | -1.363 |
| H37Rv_KO_CtpD | 0.495 | -1.15 |
| H37Rv_KO_Rv1272 | 0.13 | -0.331 |
| H37Rv_KO_SugABC | -0.241 | -2.293 |
| H37Rv_KO_MbtN | 0.477 | -1.012 |
| Trans05 | -0.393 | 1.324 |
| macrophage_unactivated | -0.877 | -1.029 |
| IL1 | 0.288 | 0.608 |
| Rapamycin | -0.911 | 0.353 |
| Tcell | 0.033 | -0.371 |
| GMCSF | -0.333 | 0.441 |
| IFNab | -0.783 | 0.668 |
| IFNg | 0.82 | 0.794 |
| IFNg_GMCSF1 | 0.179 | 0.707 |
| Rv1432_day32 | -0.97 | -1.194 |
| Rv1565c_day32 | -0.141 | -1.766 |
| secA2_input | 0.0 | -0.673 |
| delta_Rv3594 | 0.0 | -3.642 |
| delta_Rv3717 | -0.059 | -1.557 |
| delta_Rv3811 | -0.07 | -1.022 |
| delta_Rv0954 | 1.156 | -1.079 |
| PonA1 | 0.986 | -0.15 |
| EccD1_KO | -0.789 | 0.053 |
| EspI_KO | -1.454 | 0.046 |
| PE35_KO | -1.388 | -1.21 |
| PPE68_KO | -0.346 | -0.214 |
| glycerol2 | 0.377 | -1.138 |
| lignocerate | -0.511 | -1.062 |
| oleate | 0.142 | -1.151 |
| phosphatidylcholine | 1.518 | -0.661 |
| acetate | 0.073 | -0.143 |
| glucAc | -0.207 | 0.085 |
| Rv0950ko | 1.288 | -0.835 |
| Rv1096ko | 0.618 | 1.188 |
| Rv3684ko | 1.009 | 1.415 |
| delta_otsA_trehalose | 0.135 | 0.336 |