Top 10 genes with highest correlation to Rv1707/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0231/fadE4 | (cc=0.5246) | info on Rv0231/fadE4 |
| Rv0268c/- | (cc=0.4532) | info on Rv0268c/- |
| Rv0588/yrbE2B | (cc=0.4475) | info on Rv0588/yrbE2B |
| Rv3011c/gatA | (cc=0.4356) | info on Rv3011c/gatA |
| Rv3437/- | (cc=0.431) | info on Rv3437/- |
| Rv0145/- | (cc=0.4145) | info on Rv0145/- |
| Rv0905/echA6 | (cc=0.4125) | info on Rv0905/echA6 |
| Rv3675/- | (cc=0.4109) | info on Rv3675/- |
| Rv3435c/- | (cc=0.4075) | info on Rv3435c/- |
| Rv2594c/ruvC | (cc=0.4058) | info on Rv2594c/ruvC |
Correlation of Rv1707/- with Rv0588/yrbE2B
Normalized LFCs for Rv1707/-:
(description and provenance of datasets)
| Rv1707/- | Rv0588/yrbE2B | |
| Fe_supp_jason_reseq | -0.251 | -0.254 |
| low_pH_jason_reseq | -0.564 | -0.761 |
| NO_jason_reseq | 1.901 | -0.137 |
| B6_jason_reseq | 0.21 | -0.85 |
| MHCII_jason_reseq | 0.458 | -0.215 |
| Isoniazid02 | -0.096 | -1.806 |
| Rifampicin4 | -2.166 | -0.127 |
| Ethambutol3 | -1.131 | -1.677 |
| Meropenem3 | -0.491 | -1.681 |
| Vancomycin16 | -2.258 | -0.639 |
| Rv2680_day32 | 0.083 | 1.112 |
| H37Rv_KO_MarP | 0.068 | 0.102 |
| hypoxia_3wks | -0.618 | -0.399 |
| hypoxia_6wks | -1.62 | -0.209 |
| glycerol | 0.102 | -0.645 |
| cholesterol | -0.959 | -0.574 |
| AJ | 1.298 | 0.822 |
| Bibs02 | 0.279 | 0.894 |
| Bibs02c | -0.103 | -0.617 |
| BL6 | -0.438 | 0.894 |
| BL6a | 0.29 | 0.512 |
| BXD01 | -0.284 | 0.738 |
| BXD010 | 0.559 | 0.843 |
| BXD011 | 0.498 | 1.88 |
| BXD03 | 0.15 | -0.272 |
| BXD04 | -0.051 | 1.036 |
| BXD05 | 0.339 | 0.348 |
| BXD06 | 0.083 | 1.015 |
| BXD07 | 0.287 | 0.595 |
| BXD08 | 0.203 | 0.753 |
| BXD09 | 0.441 | 0.81 |
| CAST | 0.574 | 0.202 |
| CCcont | -0.371 | 0.73 |
| DS01 | -0.493 | -0.755 |
| DS02 | -1.007 | -0.748 |
| DS04 | -0.32 | 0.07 |
| DS0c | -0.135 | -0.165 |
| GP01 | 0.307 | 0.882 |
| GP02 | 0.594 | -0.047 |
| GP0c | 0.076 | 0.24 |
| NOD | 0.28 | -0.042 |
| NZO | 0.655 | 0.306 |
| PWK | 0.988 | -0.578 |
| H37Rv_KO_CtpC | -0.625 | 0.348 |
| H37Rv_KO_CtpD | 0.495 | 1.415 |
| H37Rv_KO_Rv1272 | 0.13 | 1.169 |
| H37Rv_KO_SugABC | -0.241 | 0.45 |
| H37Rv_KO_MbtN | 0.477 | -0.656 |
| Trans05 | -0.393 | 0.093 |
| macrophage_unactivated | -0.877 | -0.057 |
| IL1 | 0.288 | 0.05 |
| Rapamycin | -0.911 | -0.055 |
| Tcell | 0.033 | 0.541 |
| GMCSF | -0.333 | 0.396 |
| IFNab | -0.783 | 0.051 |
| IFNg | 0.82 | 0.315 |
| IFNg_GMCSF1 | 0.179 | -0.654 |
| Rv1432_day32 | -0.97 | 0.169 |
| Rv1565c_day32 | -0.141 | 0.621 |
| secA2_input | 0.0 | 0.25 |
| delta_Rv3594 | 0.0 | 0.132 |
| delta_Rv3717 | -0.059 | 0.541 |
| delta_Rv3811 | -0.07 | 0.913 |
| delta_Rv0954 | 1.156 | 0.842 |
| PonA1 | 0.986 | 0.546 |
| EccD1_KO | -0.789 | -0.635 |
| EspI_KO | -1.454 | -0.927 |
| PE35_KO | -1.388 | -2.042 |
| PPE68_KO | -0.346 | -1.699 |
| glycerol2 | 0.377 | -0.029 |
| lignocerate | -0.511 | 0.421 |
| oleate | 0.142 | 0.274 |
| phosphatidylcholine | 1.518 | 0.112 |
| acetate | 0.073 | 0.0 |
| glucAc | -0.207 | 0.042 |
| Rv0950ko | 1.288 | 1.984 |
| Rv1096ko | 0.618 | 2.844 |
| Rv3684ko | 1.009 | 1.503 |
| delta_otsA_trehalose | 0.135 | -0.55 |