TnSeqCorr

Top 10 genes with highest correlation to Rv1670/-:

update plotcorrelationlink to info on gene
Rv2066/cobI (cc=0.5156) info on Rv2066/cobI
Rv2489c/- (cc=0.4689) info on Rv2489c/-
Rv3451/cut3 (cc=0.4423) info on Rv3451/cut3
Rv0073/- (cc=0.4289) info on Rv0073/-
Rv1997/ctpF (cc=0.3953) info on Rv1997/ctpF
Rv1677/dsbF (cc=0.3927) info on Rv1677/dsbF
Rv1148c/- (cc=0.3915) info on Rv1148c/-
Rv1511/gmdA (cc=0.3858) info on Rv1511/gmdA
Rv1916/aceAb (cc=0.3858) info on Rv1916/aceAb
Rv1427c/fadD12 (cc=0.3851) info on Rv1427c/fadD12

Correlation of Rv1670/- with Rv2066/cobI

Normalized LFCs for Rv1670/-:
(description and provenance of datasets)
Rv1670/-Rv2066/cobI
Fe_supp_jason_reseq

0.159

-0.193

low_pH_jason_reseq

0.853

-0.268

NO_jason_reseq

-0.336

-0.302

B6_jason_reseq

-0.578

-0.52

MHCII_jason_reseq

-0.336

0.533

Isoniazid02

-1.702

-0.907

Rifampicin4

-0.366

0.479

Ethambutol3

-0.933

-0.496

Meropenem3

-1.155

0.087

Vancomycin16

-0.576

-0.438

Rv2680_day32

1.862

0.847

H37Rv_KO_MarP

0.041

-0.356

hypoxia_3wks

0.411

-0.219

hypoxia_6wks

0.626

-0.804

glycerol

-0.295

-0.028

cholesterol

0.577

0.675

AJ

0.234

0.501

Bibs02

0.984

0.868

Bibs02c

0.811

0.045

BL6

-1.179

-0.725

BL6a

-0.451

-0.575

BXD01

0.009

-0.282

BXD010

-1.115

-1.117

BXD011

-0.615

-0.974

BXD03

0.286

-0.106

BXD04

-1.143

-0.151

BXD05

0.216

-0.481

BXD06

-1.258

-1.071

BXD07

-0.603

-0.621

BXD08

0.734

-0.34

BXD09

-1.018

-0.975

CAST

0.4

-0.062

CCcont

-0.72

-0.542

DS01

0.486

0.306

DS02

1.583

0.391

DS04

0.447

0.682

DS0c

1.436

-0.149

GP01

1.015

0.943

GP02

0.636

0.078

GP0c

-0.551

-0.416

NOD

0.317

-0.413

NZO

0.03

0.275

PWK

0.946

0.151

H37Rv_KO_CtpC

-0.4

-0.58

H37Rv_KO_CtpD

1.254

-0.034

H37Rv_KO_Rv1272

-0.403

0.487

H37Rv_KO_SugABC

-0.216

-0.064

H37Rv_KO_MbtN

-1.361

0.009

Trans05

0.4

0.472

macrophage_unactivated

-0.234

0.025

IL1

2.554

0.988

Rapamycin

-0.227

0.172

Tcell

-0.583

-0.446

GMCSF

-0.694

0.29

IFNab

0.073

0.169

IFNg

-0.131

-0.39

IFNg_GMCSF1

-0.647

0.575

Rv1432_day32

-0.575

-0.039

Rv1565c_day32

-1.366

-0.577

secA2_input

0.316

-0.369

delta_Rv3594

0.337

0.304

delta_Rv3717

0.053

0.009

delta_Rv3811

-0.116

0.042

delta_Rv0954

0.497

0.28

PonA1

0.0

0.38

EccD1_KO

0.743

-0.391

EspI_KO

0.285

-0.833

PE35_KO

0.636

-0.563

PPE68_KO

-0.093

-0.797

glycerol2

-0.135

-0.217

lignocerate

-0.634

0.038

oleate

0.237

0.305

phosphatidylcholine

-0.34

-0.099

acetate

-0.477

-0.173

glucAc

-1.143

-0.16

Rv0950ko

0.392

0.594

Rv1096ko

-0.911

-0.419

Rv3684ko

-0.354

0.462

delta_otsA_trehalose

0.817

1.121