Top 10 genes with highest correlation to Rv1669/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3839/- | (cc=0.444) | info on Rv3839/- |
| Rv2352c/PPE38 | (cc=0.4404) | info on Rv2352c/PPE38 |
| Rv3438/- | (cc=0.4334) | info on Rv3438/- |
| Rv2162c/PE_PGRS38 | (cc=0.3833) | info on Rv2162c/PE_PGRS38 |
| Rv2973c/recG | (cc=0.3768) | info on Rv2973c/recG |
| Rv1563c/treY | (cc=0.372) | info on Rv1563c/treY |
| Rv1562c/treZ | (cc=0.364) | info on Rv1562c/treZ |
| Rv0255c/cobQ1 | (cc=0.3627) | info on Rv0255c/cobQ1 |
| Rv0423c/thiC | (cc=0.3537) | info on Rv0423c/thiC |
| Rv3742c/- | (cc=0.3512) | info on Rv3742c/- |
Correlation of Rv1669/- with Rv2162c/PE_PGRS38
Normalized LFCs for Rv1669/-:
(description and provenance of datasets)
| Rv1669/- | Rv2162c/PE_PGRS38 | |
| Fe_supp_jason_reseq | 0.824 | -0.024 |
| low_pH_jason_reseq | -0.519 | -0.348 |
| NO_jason_reseq | -1.756 | 0.0 |
| B6_jason_reseq | 0.0 | 0.216 |
| MHCII_jason_reseq | -0.421 | 0.264 |
| Isoniazid02 | 0.167 | -0.303 |
| Rifampicin4 | -0.065 | 0.761 |
| Ethambutol3 | -0.153 | -0.28 |
| Meropenem3 | -0.151 | -0.622 |
| Vancomycin16 | 0.804 | 0.249 |
| Rv2680_day32 | 0.633 | -0.142 |
| H37Rv_KO_MarP | -0.601 | -0.131 |
| hypoxia_3wks | 0.299 | 0.0 |
| hypoxia_6wks | -1.969 | -0.574 |
| glycerol | 0.142 | 0.395 |
| cholesterol | 0.748 | -0.389 |
| AJ | 0.067 | -0.208 |
| Bibs02 | -0.38 | 0.097 |
| Bibs02c | 1.391 | 0.723 |
| BL6 | -0.45 | -0.427 |
| BL6a | 0.821 | 0.441 |
| BXD01 | -0.204 | -0.279 |
| BXD010 | -0.137 | -1.527 |
| BXD011 | 1.278 | -0.273 |
| BXD03 | -0.06 | -0.441 |
| BXD04 | 0.0 | 0.102 |
| BXD05 | 0.884 | -0.186 |
| BXD06 | 0.677 | -0.435 |
| BXD07 | 0.257 | 0.401 |
| BXD08 | -0.164 | 0.199 |
| BXD09 | 0.407 | -0.062 |
| CAST | 0.591 | 0.145 |
| CCcont | 0.164 | -0.401 |
| DS01 | 1.09 | -0.104 |
| DS02 | -0.233 | -0.301 |
| DS04 | 1.681 | 0.639 |
| DS0c | 0.267 | -0.071 |
| GP01 | -0.508 | -0.044 |
| GP02 | 0.547 | 0.982 |
| GP0c | 0.177 | -0.367 |
| NOD | 0.576 | -1.167 |
| NZO | 0.621 | 0.545 |
| PWK | 0.524 | -1.127 |
| H37Rv_KO_CtpC | -0.76 | -0.225 |
| H37Rv_KO_CtpD | 0.173 | -0.825 |
| H37Rv_KO_Rv1272 | 1.483 | 0.172 |
| H37Rv_KO_SugABC | 0.029 | 0.185 |
| H37Rv_KO_MbtN | -0.214 | -0.081 |
| Trans05 | 1.157 | 0.134 |
| macrophage_unactivated | 1.035 | -0.556 |
| IL1 | -0.042 | -0.472 |
| Rapamycin | -0.703 | -0.436 |
| Tcell | -0.433 | -0.573 |
| GMCSF | 0.895 | 0.62 |
| IFNab | 0.33 | 0.133 |
| IFNg | 0.462 | 0.42 |
| IFNg_GMCSF1 | 1.169 | 0.321 |
| Rv1432_day32 | 0.074 | -0.535 |
| Rv1565c_day32 | 0.444 | 1.478 |
| secA2_input | -0.171 | 0.061 |
| delta_Rv3594 | 0.0 | -0.359 |
| delta_Rv3717 | -0.287 | 0.335 |
| delta_Rv3811 | 0.611 | -0.057 |
| delta_Rv0954 | -0.093 | -0.928 |
| PonA1 | 0.02 | -0.476 |
| EccD1_KO | -0.566 | -0.365 |
| EspI_KO | -0.73 | -1.067 |
| PE35_KO | -0.16 | -0.496 |
| PPE68_KO | 1.075 | -0.707 |
| glycerol2 | -0.559 | -0.717 |
| lignocerate | -0.296 | -0.794 |
| oleate | -0.345 | -0.411 |
| phosphatidylcholine | -0.071 | -0.471 |
| acetate | 0.346 | 0.209 |
| glucAc | -0.08 | -0.02 |
| Rv0950ko | 0.766 | -0.383 |
| Rv1096ko | 0.856 | 0.582 |
| Rv3684ko | -0.187 | 0.419 |
| delta_otsA_trehalose | 2.546 | 1.281 |