TnSeqCorr

Top 10 genes with highest correlation to Rv1608c/bcpB:

update plotcorrelationlink to info on gene
Rv1123c/bpoB (cc=0.4712) info on Rv1123c/bpoB
Rv2631/- (cc=0.4394) info on Rv2631/-
Rv1938/ephB (cc=0.4246) info on Rv1938/ephB
Rv3074/- (cc=0.4185) info on Rv3074/-
Rv1343c/lprD (cc=0.3899) info on Rv1343c/lprD
Rv0798c/cfp29 (cc=0.3878) info on Rv0798c/cfp29
Rv2795c/- (cc=0.3834) info on Rv2795c/-
Rv2644c/- (cc=0.381) info on Rv2644c/-
Rv0740/- (cc=0.3768) info on Rv0740/-
Rv1508A/- (cc=0.3757) info on Rv1508A/-

Correlation of Rv1608c/bcpB with Rv0798c/cfp29

Normalized LFCs for Rv1608c/bcpB:
(description and provenance of datasets)
Rv1608c/bcpBRv0798c/cfp29
Fe_supp_jason_reseq

0.254

-1.043

low_pH_jason_reseq

0.636

1.091

NO_jason_reseq

0.53

0.076

B6_jason_reseq

1.531

0.324

MHCII_jason_reseq

0.834

-0.12

Isoniazid02

0.086

0.095

Rifampicin4

0.127

0.176

Ethambutol3

1.119

-0.17

Meropenem3

0.54

0.053

Vancomycin16

0.064

0.443

Rv2680_day32

0.533

1.292

H37Rv_KO_MarP

-0.076

-0.378

hypoxia_3wks

0.399

-1.551

hypoxia_6wks

-1.38

-1.416

glycerol

-0.148

-0.272

cholesterol

-1.459

-0.046

AJ

0.16

-0.151

Bibs02

0.446

1.044

Bibs02c

0.144

-0.79

BL6

-0.229

0.346

BL6a

-0.222

0.346

BXD01

-0.035

0.984

BXD010

-0.29

-0.605

BXD011

0.189

0.383

BXD03

-0.234

0.272

BXD04

-0.503

0.751

BXD05

-0.882

1.058

BXD06

0.058

0.233

BXD07

-0.457

0.841

BXD08

-0.085

1.065

BXD09

-0.382

0.853

CAST

-0.235

1.23

CCcont

-0.081

1.106

DS01

0.0

0.82

DS02

-1.5

-0.217

DS04

0.474

-0.732

DS0c

0.338

0.702

GP01

-0.569

-0.099

GP02

-1.315

-0.81

GP0c

-2.164

-0.551

NOD

-0.252

0.88

NZO

-1.001

-1.15

PWK

-0.466

-0.337

H37Rv_KO_CtpC

-0.618

0.194

H37Rv_KO_CtpD

0.951

1.96

H37Rv_KO_Rv1272

0.012

0.284

H37Rv_KO_SugABC

-2.006

-0.964

H37Rv_KO_MbtN

0.308

1.833

Trans05

-0.133

1.581

macrophage_unactivated

0.884

1.016

IL1

0.131

-0.332

Rapamycin

1.452

-0.114

Tcell

-0.349

0.857

GMCSF

0.61

-0.296

IFNab

0.302

0.314

IFNg

-1.243

-0.984

IFNg_GMCSF1

0.138

-0.606

Rv1432_day32

-0.314

0.936

Rv1565c_day32

-1.118

-0.381

secA2_input

-0.755

-0.593

delta_Rv3594

-1.38

-0.535

delta_Rv3717

-0.276

-0.583

delta_Rv3811

-0.607

0.739

delta_Rv0954

-2.101

-0.318

PonA1

-0.366

-0.725

EccD1_KO

1.983

1.779

EspI_KO

-0.051

1.791

PE35_KO

1.248

1.747

PPE68_KO

1.197

2.521

glycerol2

-1.087

0.617

lignocerate

-0.459

0.655

oleate

-0.25

0.162

phosphatidylcholine

-0.528

0.81

acetate

-0.889

0.19

glucAc

0.09

0.209

Rv0950ko

0.359

1.095

Rv1096ko

-0.084

-0.181

Rv3684ko

-1.916

0.547

delta_otsA_trehalose

-1.049

0.803