Top 10 genes with highest correlation to Rv1555/frdD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1291c/- | (cc=0.5344) | info on Rv1291c/- |
| Rv2651c/- | (cc=0.4945) | info on Rv2651c/- |
| Rv1440/secG | (cc=0.4916) | info on Rv1440/secG |
| Rv0435c/- | (cc=0.4861) | info on Rv0435c/- |
| Rv2811/- | (cc=0.4843) | info on Rv2811/- |
| Rv2831/echA16 | (cc=0.4814) | info on Rv2831/echA16 |
| Rv1736c/narX | (cc=0.4647) | info on Rv1736c/narX |
| Rv0621/- | (cc=0.4638) | info on Rv0621/- |
| Rv3371/- | (cc=0.4506) | info on Rv3371/- |
| Rv0936/pstA2 | (cc=0.4421) | info on Rv0936/pstA2 |
Correlation of Rv1555/frdD with Rv2831/echA16
Normalized LFCs for Rv1555/frdD:
(description and provenance of datasets)
| Rv1555/frdD | Rv2831/echA16 | |
| Fe_supp_jason_reseq | -0.54 | -0.256 |
| low_pH_jason_reseq | -0.318 | 0.639 |
| NO_jason_reseq | 0.528 | -0.116 |
| B6_jason_reseq | 1.416 | 1.588 |
| MHCII_jason_reseq | 1.018 | 1.883 |
| Isoniazid02 | 0.0 | 2.51 |
| Rifampicin4 | 0.761 | 0.601 |
| Ethambutol3 | 0.831 | 2.881 |
| Meropenem3 | 0.068 | 0.048 |
| Vancomycin16 | 0.406 | 0.499 |
| Rv2680_day32 | -1.722 | -3.534 |
| H37Rv_KO_MarP | 0.017 | -0.086 |
| hypoxia_3wks | -0.271 | 0.861 |
| hypoxia_6wks | -0.111 | 0.489 |
| glycerol | 0.262 | 0.205 |
| cholesterol | -0.419 | 1.595 |
| AJ | 0.237 | 0.145 |
| Bibs02 | 0.098 | 0.54 |
| Bibs02c | -0.359 | -0.527 |
| BL6 | -0.491 | -1.548 |
| BL6a | -0.746 | -0.756 |
| BXD01 | -0.915 | -1.326 |
| BXD010 | -0.939 | -1.676 |
| BXD011 | 0.107 | 0.027 |
| BXD03 | 0.199 | -1.77 |
| BXD04 | -0.946 | -1.259 |
| BXD05 | -1.399 | -0.812 |
| BXD06 | -0.188 | -1.436 |
| BXD07 | -0.742 | -0.809 |
| BXD08 | -0.684 | -0.549 |
| BXD09 | -0.713 | -1.143 |
| CAST | 0.347 | -1.39 |
| CCcont | -1.552 | -1.479 |
| DS01 | 0.18 | 0.541 |
| DS02 | 0.047 | 0.859 |
| DS04 | -0.489 | 1.427 |
| DS0c | 0.116 | 0.046 |
| GP01 | -2.481 | 0.531 |
| GP02 | -1.439 | -1.576 |
| GP0c | -1.125 | -0.381 |
| NOD | -0.42 | -0.724 |
| NZO | 0.224 | -1.623 |
| PWK | 0.169 | 0.432 |
| H37Rv_KO_CtpC | -1.489 | -1.522 |
| H37Rv_KO_CtpD | -1.592 | 0.573 |
| H37Rv_KO_Rv1272 | -0.041 | -0.773 |
| H37Rv_KO_SugABC | -2.397 | -1.335 |
| H37Rv_KO_MbtN | -0.939 | -1.826 |
| Trans05 | -2.523 | -2.563 |
| macrophage_unactivated | -0.6 | -0.347 |
| IL1 | 0.329 | 1.385 |
| Rapamycin | 0.414 | 0.064 |
| Tcell | 0.218 | 0.821 |
| GMCSF | 3.2 | -0.055 |
| IFNab | -0.245 | 0.653 |
| IFNg | 0.388 | 0.673 |
| IFNg_GMCSF1 | 0.317 | 0.503 |
| Rv1432_day32 | 0.073 | -0.322 |
| Rv1565c_day32 | 0.889 | 0.924 |
| secA2_input | 1.691 | 0.0 |
| delta_Rv3594 | -0.843 | 1.825 |
| delta_Rv3717 | -0.011 | 1.538 |
| delta_Rv3811 | 0.443 | 2.066 |
| delta_Rv0954 | -0.149 | 2.374 |
| PonA1 | 1.017 | 3.382 |
| EccD1_KO | 0.48 | -1.184 |
| EspI_KO | -0.088 | -0.054 |
| PE35_KO | 0.303 | 0.055 |
| PPE68_KO | -0.518 | -1.389 |
| glycerol2 | -1.075 | -1.345 |
| lignocerate | -0.756 | -1.729 |
| oleate | -0.393 | -0.519 |
| phosphatidylcholine | -0.49 | -1.62 |
| acetate | -0.567 | -2.613 |
| glucAc | -0.817 | -1.71 |
| Rv0950ko | -0.027 | -1.152 |
| Rv1096ko | -0.461 | 0.232 |
| Rv3684ko | -0.468 | -0.848 |
| delta_otsA_trehalose | -0.305 | -0.106 |