Top 10 genes with highest correlation to Rv1555/frdD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1291c/- | (cc=0.5344) | info on Rv1291c/- |
| Rv2651c/- | (cc=0.4945) | info on Rv2651c/- |
| Rv1440/secG | (cc=0.4916) | info on Rv1440/secG |
| Rv0435c/- | (cc=0.4861) | info on Rv0435c/- |
| Rv2811/- | (cc=0.4843) | info on Rv2811/- |
| Rv2831/echA16 | (cc=0.4814) | info on Rv2831/echA16 |
| Rv1736c/narX | (cc=0.4647) | info on Rv1736c/narX |
| Rv0621/- | (cc=0.4638) | info on Rv0621/- |
| Rv3371/- | (cc=0.4506) | info on Rv3371/- |
| Rv0936/pstA2 | (cc=0.4421) | info on Rv0936/pstA2 |
Correlation of Rv1555/frdD with Rv0435c/-
Normalized LFCs for Rv1555/frdD:
(description and provenance of datasets)
| Rv1555/frdD | Rv0435c/- | |
| Fe_supp_jason_reseq | -0.54 | -0.83 |
| low_pH_jason_reseq | -0.318 | -0.957 |
| NO_jason_reseq | 0.528 | 0.21 |
| B6_jason_reseq | 1.416 | 0.495 |
| MHCII_jason_reseq | 1.018 | 0.761 |
| Isoniazid02 | 0.0 | 0.403 |
| Rifampicin4 | 0.761 | 0.0 |
| Ethambutol3 | 0.831 | -0.202 |
| Meropenem3 | 0.068 | 1.136 |
| Vancomycin16 | 0.406 | 0.462 |
| Rv2680_day32 | -1.722 | -0.621 |
| H37Rv_KO_MarP | 0.017 | 0.83 |
| hypoxia_3wks | -0.271 | -0.271 |
| hypoxia_6wks | -0.111 | 0.441 |
| glycerol | 0.262 | 0.487 |
| cholesterol | -0.419 | 0.019 |
| AJ | 0.237 | 0.455 |
| Bibs02 | 0.098 | 0.262 |
| Bibs02c | -0.359 | 0.061 |
| BL6 | -0.491 | -0.85 |
| BL6a | -0.746 | -0.766 |
| BXD01 | -0.915 | -0.902 |
| BXD010 | -0.939 | -0.442 |
| BXD011 | 0.107 | -0.499 |
| BXD03 | 0.199 | -1.209 |
| BXD04 | -0.946 | -0.34 |
| BXD05 | -1.399 | -0.689 |
| BXD06 | -0.188 | -0.677 |
| BXD07 | -0.742 | -0.785 |
| BXD08 | -0.684 | -0.937 |
| BXD09 | -0.713 | -0.766 |
| CAST | 0.347 | -0.195 |
| CCcont | -1.552 | -1.324 |
| DS01 | 0.18 | 0.305 |
| DS02 | 0.047 | 0.014 |
| DS04 | -0.489 | 0.129 |
| DS0c | 0.116 | 0.171 |
| GP01 | -2.481 | -0.875 |
| GP02 | -1.439 | -0.472 |
| GP0c | -1.125 | -0.782 |
| NOD | -0.42 | -0.264 |
| NZO | 0.224 | -0.013 |
| PWK | 0.169 | -0.058 |
| H37Rv_KO_CtpC | -1.489 | -1.134 |
| H37Rv_KO_CtpD | -1.592 | -0.139 |
| H37Rv_KO_Rv1272 | -0.041 | -1.317 |
| H37Rv_KO_SugABC | -2.397 | -0.203 |
| H37Rv_KO_MbtN | -0.939 | -1.563 |
| Trans05 | -2.523 | -1.139 |
| macrophage_unactivated | -0.6 | -0.461 |
| IL1 | 0.329 | 0.086 |
| Rapamycin | 0.414 | -0.424 |
| Tcell | 0.218 | -0.244 |
| GMCSF | 3.2 | 0.224 |
| IFNab | -0.245 | -0.877 |
| IFNg | 0.388 | -0.118 |
| IFNg_GMCSF1 | 0.317 | 0.374 |
| Rv1432_day32 | 0.073 | -0.086 |
| Rv1565c_day32 | 0.889 | 0.78 |
| secA2_input | 1.691 | 0.016 |
| delta_Rv3594 | -0.843 | -1.08 |
| delta_Rv3717 | -0.011 | -0.56 |
| delta_Rv3811 | 0.443 | -0.739 |
| delta_Rv0954 | -0.149 | -0.386 |
| PonA1 | 1.017 | -0.159 |
| EccD1_KO | 0.48 | 0.178 |
| EspI_KO | -0.088 | -0.328 |
| PE35_KO | 0.303 | -0.648 |
| PPE68_KO | -0.518 | -0.509 |
| glycerol2 | -1.075 | -0.967 |
| lignocerate | -0.756 | -0.647 |
| oleate | -0.393 | -1.133 |
| phosphatidylcholine | -0.49 | -0.73 |
| acetate | -0.567 | -1.237 |
| glucAc | -0.817 | -0.567 |
| Rv0950ko | -0.027 | 0.199 |
| Rv1096ko | -0.461 | 0.89 |
| Rv3684ko | -0.468 | 0.478 |
| delta_otsA_trehalose | -0.305 | -2.069 |