Top 10 genes with highest correlation to Rv1555/frdD:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1291c/- | (cc=0.5344) | info on Rv1291c/- |
| Rv2651c/- | (cc=0.4945) | info on Rv2651c/- |
| Rv1440/secG | (cc=0.4916) | info on Rv1440/secG |
| Rv0435c/- | (cc=0.4861) | info on Rv0435c/- |
| Rv2811/- | (cc=0.4843) | info on Rv2811/- |
| Rv2831/echA16 | (cc=0.4814) | info on Rv2831/echA16 |
| Rv1736c/narX | (cc=0.4647) | info on Rv1736c/narX |
| Rv0621/- | (cc=0.4638) | info on Rv0621/- |
| Rv3371/- | (cc=0.4506) | info on Rv3371/- |
| Rv0936/pstA2 | (cc=0.4421) | info on Rv0936/pstA2 |
Correlation of Rv1555/frdD with Rv2651c/-
Normalized LFCs for Rv1555/frdD:
(description and provenance of datasets)
| Rv1555/frdD | Rv2651c/- | |
| Fe_supp_jason_reseq | -0.54 | 1.086 |
| low_pH_jason_reseq | -0.318 | -1.419 |
| NO_jason_reseq | 0.528 | 1.394 |
| B6_jason_reseq | 1.416 | 2.983 |
| MHCII_jason_reseq | 1.018 | 2.155 |
| Isoniazid02 | 0.0 | 0.0 |
| Rifampicin4 | 0.761 | 0.0 |
| Ethambutol3 | 0.831 | 0.0 |
| Meropenem3 | 0.068 | 0.0 |
| Vancomycin16 | 0.406 | 0.0 |
| Rv2680_day32 | -1.722 | 0.0 |
| H37Rv_KO_MarP | 0.017 | 0.481 |
| hypoxia_3wks | -0.271 | 0.0 |
| hypoxia_6wks | -0.111 | 0.464 |
| glycerol | 0.262 | 0.862 |
| cholesterol | -0.419 | 0.55 |
| AJ | 0.237 | 1.193 |
| Bibs02 | 0.098 | 1.219 |
| Bibs02c | -0.359 | -1.325 |
| BL6 | -0.491 | -0.792 |
| BL6a | -0.746 | -1.914 |
| BXD01 | -0.915 | -2.32 |
| BXD010 | -0.939 | -1.823 |
| BXD011 | 0.107 | -2.099 |
| BXD03 | 0.199 | -2.286 |
| BXD04 | -0.946 | 0.32 |
| BXD05 | -1.399 | -3.372 |
| BXD06 | -0.188 | -1.178 |
| BXD07 | -0.742 | -1.714 |
| BXD08 | -0.684 | -1.573 |
| BXD09 | -0.713 | -2.15 |
| CAST | 0.347 | 0.874 |
| CCcont | -1.552 | -1.767 |
| DS01 | 0.18 | -0.902 |
| DS02 | 0.047 | -0.457 |
| DS04 | -0.489 | -0.512 |
| DS0c | 0.116 | 0.771 |
| GP01 | -2.481 | -2.573 |
| GP02 | -1.439 | -1.759 |
| GP0c | -1.125 | -3.388 |
| NOD | -0.42 | -1.352 |
| NZO | 0.224 | -0.549 |
| PWK | 0.169 | 0.034 |
| H37Rv_KO_CtpC | -1.489 | 0.014 |
| H37Rv_KO_CtpD | -1.592 | -3.301 |
| H37Rv_KO_Rv1272 | -0.041 | -3.675 |
| H37Rv_KO_SugABC | -2.397 | -2.233 |
| H37Rv_KO_MbtN | -0.939 | -2.249 |
| Trans05 | -2.523 | -3.405 |
| macrophage_unactivated | -0.6 | -0.754 |
| IL1 | 0.329 | 0.792 |
| Rapamycin | 0.414 | -1.007 |
| Tcell | 0.218 | 0.156 |
| GMCSF | 3.2 | 0.063 |
| IFNab | -0.245 | -0.151 |
| IFNg | 0.388 | 0.975 |
| IFNg_GMCSF1 | 0.317 | -0.572 |
| Rv1432_day32 | 0.073 | 0.0 |
| Rv1565c_day32 | 0.889 | 0.0 |
| secA2_input | 1.691 | 1.943 |
| delta_Rv3594 | -0.843 | 0.444 |
| delta_Rv3717 | -0.011 | 0.987 |
| delta_Rv3811 | 0.443 | -0.391 |
| delta_Rv0954 | -0.149 | 0.0 |
| PonA1 | 1.017 | -0.979 |
| EccD1_KO | 0.48 | -2.263 |
| EspI_KO | -0.088 | -2.447 |
| PE35_KO | 0.303 | -2.249 |
| PPE68_KO | -0.518 | -0.873 |
| glycerol2 | -1.075 | 0.0 |
| lignocerate | -0.756 | 0.712 |
| oleate | -0.393 | 0.0 |
| phosphatidylcholine | -0.49 | 0.193 |
| acetate | -0.567 | 1.779 |
| glucAc | -0.817 | 0.877 |
| Rv0950ko | -0.027 | -0.395 |
| Rv1096ko | -0.461 | -1.315 |
| Rv3684ko | -0.468 | -0.21 |
| delta_otsA_trehalose | -0.305 | -0.266 |