Top 10 genes with highest correlation to Rv1546/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2721c/- | (cc=0.5285) | info on Rv2721c/- |
| Rv0644c/mmaA2 | (cc=0.5251) | info on Rv0644c/mmaA2 |
| Rv1336/cysM | (cc=0.5003) | info on Rv1336/cysM |
| Rv0183/- | (cc=0.4971) | info on Rv0183/- |
| Rv0877/- | (cc=0.4921) | info on Rv0877/- |
| Rv3842c/glpQ1 | (cc=0.4863) | info on Rv3842c/glpQ1 |
| Rv0645c/mmaA1 | (cc=0.4861) | info on Rv0645c/mmaA1 |
| Rv1334/mec | (cc=0.4685) | info on Rv1334/mec |
| Rv0048c/- | (cc=0.4507) | info on Rv0048c/- |
| Rv2191/- | (cc=0.4464) | info on Rv2191/- |
Correlation of Rv1546/- with Rv0644c/mmaA2
Normalized LFCs for Rv1546/-:
(description and provenance of datasets)
| Rv1546/- | Rv0644c/mmaA2 | |
| Fe_supp_jason_reseq | -1.364 | -0.227 |
| low_pH_jason_reseq | 0.452 | 1.2 |
| NO_jason_reseq | 1.315 | 0.882 |
| B6_jason_reseq | 0.499 | 0.5 |
| MHCII_jason_reseq | 0.705 | -0.154 |
| Isoniazid02 | 0.208 | 0.963 |
| Rifampicin4 | 0.923 | -0.46 |
| Ethambutol3 | -0.024 | 2.038 |
| Meropenem3 | 1.798 | 0.24 |
| Vancomycin16 | 0.297 | 1.926 |
| Rv2680_day32 | 0.993 | 3.409 |
| H37Rv_KO_MarP | 0.174 | 0.831 |
| hypoxia_3wks | 1.647 | 3.688 |
| hypoxia_6wks | 1.576 | 4.063 |
| glycerol | -0.999 | -0.208 |
| cholesterol | 0.0 | -0.986 |
| AJ | 0.292 | 0.427 |
| Bibs02 | -0.013 | -0.621 |
| Bibs02c | -0.456 | -0.918 |
| BL6 | 0.777 | 2.082 |
| BL6a | -0.432 | 2.393 |
| BXD01 | 1.411 | 3.306 |
| BXD010 | -0.225 | 2.737 |
| BXD011 | 0.766 | 3.421 |
| BXD03 | -0.517 | 1.467 |
| BXD04 | 1.519 | 1.779 |
| BXD05 | 0.631 | 2.071 |
| BXD06 | 0.322 | 2.375 |
| BXD07 | 0.986 | 2.536 |
| BXD08 | 0.644 | 2.516 |
| BXD09 | 1.048 | 3.211 |
| CAST | 0.823 | 0.611 |
| CCcont | -1.829 | 0.434 |
| DS01 | -0.31 | -1.353 |
| DS02 | -0.714 | 0.203 |
| DS04 | 0.769 | 1.025 |
| DS0c | 0.449 | -0.332 |
| GP01 | 1.724 | 2.536 |
| GP02 | 0.682 | 2.939 |
| GP0c | 1.278 | 1.688 |
| NOD | 1.259 | 1.593 |
| NZO | 0.324 | 1.231 |
| PWK | 0.828 | -0.347 |
| H37Rv_KO_CtpC | 0.419 | 0.238 |
| H37Rv_KO_CtpD | -1.857 | 1.411 |
| H37Rv_KO_Rv1272 | 1.129 | 2.077 |
| H37Rv_KO_SugABC | -0.047 | 1.754 |
| H37Rv_KO_MbtN | 1.098 | 2.539 |
| Trans05 | 1.966 | 2.578 |
| macrophage_unactivated | -0.319 | -1.171 |
| IL1 | 0.231 | -0.326 |
| Rapamycin | -1.068 | -1.252 |
| Tcell | 0.254 | 1.665 |
| GMCSF | -0.364 | -0.914 |
| IFNab | -1.119 | -1.778 |
| IFNg | -0.631 | -1.547 |
| IFNg_GMCSF1 | 0.28 | -1.574 |
| Rv1432_day32 | 1.587 | 5.684 |
| Rv1565c_day32 | 0.873 | 0.229 |
| secA2_input | 0.734 | -0.753 |
| delta_Rv3594 | -0.506 | 0.817 |
| delta_Rv3717 | 1.626 | 2.513 |
| delta_Rv3811 | 0.427 | 1.089 |
| delta_Rv0954 | -0.187 | -0.756 |
| PonA1 | -0.549 | -1.215 |
| EccD1_KO | -0.135 | -1.681 |
| EspI_KO | 0.627 | -1.646 |
| PE35_KO | -0.715 | -1.555 |
| PPE68_KO | -0.531 | -2.332 |
| glycerol2 | 0.3 | 1.843 |
| lignocerate | -0.58 | 1.074 |
| oleate | 1.136 | 0.81 |
| phosphatidylcholine | 0.245 | 1.455 |
| acetate | -0.884 | 0.188 |
| glucAc | -1.069 | 0.068 |
| Rv0950ko | 0.0 | -0.178 |
| Rv1096ko | -0.075 | -1.246 |
| Rv3684ko | 1.264 | 0.2 |
| delta_otsA_trehalose | 0.431 | -1.578 |