Top 10 genes with highest correlation to Rv1533/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3887c/eccD2 | (cc=0.5504) | info on Rv3887c/eccD2 |
| Rv3673c/- | (cc=0.5449) | info on Rv3673c/- |
| Rv0642c/mmaA4 | (cc=0.5411) | info on Rv0642c/mmaA4 |
| Rv3008/- | (cc=0.5388) | info on Rv3008/- |
| Rv0059/- | (cc=0.5306) | info on Rv0059/- |
| Rv0701/rplC | (cc=0.5207) | info on Rv0701/rplC |
| Rv3528c/- | (cc=0.5151) | info on Rv3528c/- |
| Rv3796/- | (cc=0.5085) | info on Rv3796/- |
| Rv0588/yrbE2B | (cc=0.4979) | info on Rv0588/yrbE2B |
| Rv2678c/hemE | (cc=0.4949) | info on Rv2678c/hemE |
Correlation of Rv1533/- with Rv0642c/mmaA4
Normalized LFCs for Rv1533/-:
(description and provenance of datasets)
| Rv1533/- | Rv0642c/mmaA4 | |
| Fe_supp_jason_reseq | 0.369 | 1.547 |
| low_pH_jason_reseq | -0.532 | 2.202 |
| NO_jason_reseq | -0.683 | 2.678 |
| B6_jason_reseq | 0.119 | -2.886 |
| MHCII_jason_reseq | 0.458 | -1.687 |
| Isoniazid02 | -0.212 | -1.333 |
| Rifampicin4 | -0.233 | -1.565 |
| Ethambutol3 | 0.114 | -2.112 |
| Meropenem3 | -0.612 | -1.815 |
| Vancomycin16 | -0.512 | -6.0 |
| Rv2680_day32 | 0.272 | -0.359 |
| H37Rv_KO_MarP | 0.068 | 0.571 |
| hypoxia_3wks | 0.63 | -0.937 |
| hypoxia_6wks | 1.253 | 3.548 |
| glycerol | 0.607 | 1.556 |
| cholesterol | 0.106 | -0.145 |
| AJ | 0.17 | 0.585 |
| Bibs02 | 0.054 | 0.717 |
| Bibs02c | 0.605 | 2.877 |
| BL6 | 0.797 | 2.544 |
| BL6a | 1.093 | 3.946 |
| BXD01 | 0.944 | 4.224 |
| BXD010 | -0.21 | 4.186 |
| BXD011 | 1.169 | 6.0 |
| BXD03 | 0.647 | 4.026 |
| BXD04 | 1.188 | 3.598 |
| BXD05 | 1.156 | 4.7 |
| BXD06 | 1.322 | 5.627 |
| BXD07 | 0.537 | 4.784 |
| BXD08 | 0.792 | 5.896 |
| BXD09 | 0.658 | 4.223 |
| CAST | -0.377 | -0.23 |
| CCcont | 1.47 | 5.608 |
| DS01 | 0.303 | -0.236 |
| DS02 | 0.249 | -0.217 |
| DS04 | 0.0 | 2.617 |
| DS0c | 0.952 | -0.217 |
| GP01 | 1.233 | 6.0 |
| GP02 | 0.51 | 3.274 |
| GP0c | 0.218 | 6.0 |
| NOD | 0.067 | 0.0 |
| NZO | 0.577 | -0.199 |
| PWK | 0.277 | 0.342 |
| H37Rv_KO_CtpC | 0.293 | 4.153 |
| H37Rv_KO_CtpD | 1.396 | 1.805 |
| H37Rv_KO_Rv1272 | 0.674 | 4.035 |
| H37Rv_KO_SugABC | 1.739 | 1.362 |
| H37Rv_KO_MbtN | 1.062 | 6.0 |
| Trans05 | 1.248 | 4.713 |
| macrophage_unactivated | 0.657 | -3.595 |
| IL1 | 0.252 | 0.297 |
| Rapamycin | 0.295 | -0.706 |
| Tcell | 0.782 | -0.124 |
| GMCSF | 0.491 | -3.126 |
| IFNab | -0.076 | -0.883 |
| IFNg | 0.131 | -4.153 |
| IFNg_GMCSF1 | -0.16 | -5.477 |
| Rv1432_day32 | -0.674 | -0.98 |
| Rv1565c_day32 | 0.174 | -1.21 |
| secA2_input | 1.207 | 0.424 |
| delta_Rv3594 | 0.128 | 1.768 |
| delta_Rv3717 | 0.763 | 3.284 |
| delta_Rv3811 | 0.062 | 1.646 |
| delta_Rv0954 | 0.671 | -2.158 |
| PonA1 | 1.589 | -6.0 |
| EccD1_KO | -1.125 | -6.0 |
| EspI_KO | -1.705 | -6.0 |
| PE35_KO | -0.948 | -6.0 |
| PPE68_KO | -0.989 | -6.0 |
| glycerol2 | 0.31 | -1.684 |
| lignocerate | 0.395 | -1.464 |
| oleate | 0.143 | -1.167 |
| phosphatidylcholine | 0.637 | -1.683 |
| acetate | 0.284 | -1.561 |
| glucAc | 0.212 | -0.451 |
| Rv0950ko | 0.103 | -3.98 |
| Rv1096ko | 0.305 | -3.906 |
| Rv3684ko | 0.832 | -1.628 |
| delta_otsA_trehalose | -0.898 | -0.595 |