Top 10 genes with highest correlation to Rv1509/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2430c/PPE41 | (cc=0.6287) | info on Rv2430c/PPE41 |
| Rv2443/dctA | (cc=0.6148) | info on Rv2443/dctA |
| Rv2338c/moeW | (cc=0.5922) | info on Rv2338c/moeW |
| Rv3278c/- | (cc=0.5822) | info on Rv3278c/- |
| Rv1500/- | (cc=0.5786) | info on Rv1500/- |
| Rv1917c/PPE34 | (cc=0.5755) | info on Rv1917c/PPE34 |
| Rv0371c/- | (cc=0.565) | info on Rv0371c/- |
| Rv1372/- | (cc=0.5593) | info on Rv1372/- |
| Rv0305c/PPE6 | (cc=0.5523) | info on Rv0305c/PPE6 |
| Rv1505c/- | (cc=0.5482) | info on Rv1505c/- |
Correlation of Rv1509/- with Rv2338c/moeW
Normalized LFCs for Rv1509/-:
(description and provenance of datasets)
| Rv1509/- | Rv2338c/moeW | |
| Fe_supp_jason_reseq | 0.838 | 1.904 |
| low_pH_jason_reseq | -0.472 | 0.425 |
| NO_jason_reseq | -0.173 | 1.126 |
| B6_jason_reseq | 0.406 | 0.429 |
| MHCII_jason_reseq | -0.031 | 0.0 |
| Isoniazid02 | 0.192 | -0.038 |
| Rifampicin4 | 0.073 | 0.138 |
| Ethambutol3 | -0.069 | 0.235 |
| Meropenem3 | -0.212 | -0.266 |
| Vancomycin16 | 0.143 | -0.358 |
| Rv2680_day32 | -0.183 | -0.891 |
| H37Rv_KO_MarP | -0.138 | -0.6 |
| hypoxia_3wks | -1.097 | 0.116 |
| hypoxia_6wks | 0.04 | -0.251 |
| glycerol | 0.211 | -0.731 |
| cholesterol | 0.475 | -0.115 |
| AJ | 1.649 | 0.529 |
| Bibs02 | -0.158 | -0.534 |
| Bibs02c | -0.747 | 0.053 |
| BL6 | 0.619 | 0.453 |
| BL6a | 0.65 | 0.646 |
| BXD01 | 1.03 | 0.766 |
| BXD010 | 1.154 | 0.343 |
| BXD011 | 1.071 | 0.614 |
| BXD03 | 1.07 | 0.715 |
| BXD04 | 0.844 | 0.307 |
| BXD05 | 1.52 | 0.626 |
| BXD06 | 1.139 | 0.621 |
| BXD07 | 0.798 | 0.644 |
| BXD08 | 1.563 | 0.482 |
| BXD09 | 1.182 | 0.677 |
| CAST | 0.846 | 0.379 |
| CCcont | 0.687 | 0.341 |
| DS01 | 0.577 | 0.229 |
| DS02 | 0.227 | 0.941 |
| DS04 | 0.786 | 0.0 |
| DS0c | -0.536 | -0.563 |
| GP01 | 0.454 | -0.323 |
| GP02 | 1.57 | 0.172 |
| GP0c | -0.277 | 0.242 |
| NOD | 3.544 | 1.765 |
| NZO | 1.244 | 0.147 |
| PWK | 0.831 | 0.098 |
| H37Rv_KO_CtpC | 0.911 | -0.647 |
| H37Rv_KO_CtpD | 1.976 | 1.709 |
| H37Rv_KO_Rv1272 | 0.921 | 1.223 |
| H37Rv_KO_SugABC | -0.085 | 0.428 |
| H37Rv_KO_MbtN | 0.841 | 0.373 |
| Trans05 | 0.375 | 0.711 |
| macrophage_unactivated | 0.0 | 0.338 |
| IL1 | 0.4 | 0.08 |
| Rapamycin | -0.97 | -1.053 |
| Tcell | 0.153 | 0.0 |
| GMCSF | 0.356 | 0.071 |
| IFNab | -0.45 | -0.828 |
| IFNg | 0.42 | -0.473 |
| IFNg_GMCSF1 | -0.075 | -0.968 |
| Rv1432_day32 | 1.119 | 0.034 |
| Rv1565c_day32 | 1.579 | -0.066 |
| secA2_input | -1.363 | -0.435 |
| delta_Rv3594 | -0.707 | -0.205 |
| delta_Rv3717 | -0.466 | -0.214 |
| delta_Rv3811 | -0.518 | 0.47 |
| delta_Rv0954 | -1.083 | -0.129 |
| PonA1 | -0.304 | 0.394 |
| EccD1_KO | 0.062 | -0.086 |
| EspI_KO | -1.058 | -1.415 |
| PE35_KO | -0.35 | -0.753 |
| PPE68_KO | -0.32 | -0.083 |
| glycerol2 | -0.21 | -0.307 |
| lignocerate | -0.386 | -0.434 |
| oleate | 0.53 | 0.379 |
| phosphatidylcholine | 0.241 | 0.062 |
| acetate | -0.175 | -0.64 |
| glucAc | -0.436 | -0.628 |
| Rv0950ko | -0.917 | 0.874 |
| Rv1096ko | -0.986 | -0.971 |
| Rv3684ko | -0.439 | -0.216 |
| delta_otsA_trehalose | -0.564 | -0.342 |