Top 10 genes with highest correlation to Rv1509/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2430c/PPE41 | (cc=0.6287) | info on Rv2430c/PPE41 |
| Rv2443/dctA | (cc=0.6148) | info on Rv2443/dctA |
| Rv2338c/moeW | (cc=0.5922) | info on Rv2338c/moeW |
| Rv3278c/- | (cc=0.5822) | info on Rv3278c/- |
| Rv1500/- | (cc=0.5786) | info on Rv1500/- |
| Rv1917c/PPE34 | (cc=0.5755) | info on Rv1917c/PPE34 |
| Rv0371c/- | (cc=0.565) | info on Rv0371c/- |
| Rv1372/- | (cc=0.5593) | info on Rv1372/- |
| Rv0305c/PPE6 | (cc=0.5523) | info on Rv0305c/PPE6 |
| Rv1505c/- | (cc=0.5482) | info on Rv1505c/- |
Correlation of Rv1509/- with Rv1372/-
Normalized LFCs for Rv1509/-:
(description and provenance of datasets)
| Rv1509/- | Rv1372/- | |
| Fe_supp_jason_reseq | 0.838 | 0.878 |
| low_pH_jason_reseq | -0.472 | -0.356 |
| NO_jason_reseq | -0.173 | -0.076 |
| B6_jason_reseq | 0.406 | -0.273 |
| MHCII_jason_reseq | -0.031 | 0.298 |
| Isoniazid02 | 0.192 | -0.038 |
| Rifampicin4 | 0.073 | -0.615 |
| Ethambutol3 | -0.069 | -0.098 |
| Meropenem3 | -0.212 | -0.425 |
| Vancomycin16 | 0.143 | 0.138 |
| Rv2680_day32 | -0.183 | 0.228 |
| H37Rv_KO_MarP | -0.138 | 0.121 |
| hypoxia_3wks | -1.097 | -0.227 |
| hypoxia_6wks | 0.04 | -1.027 |
| glycerol | 0.211 | -0.31 |
| cholesterol | 0.475 | 1.593 |
| AJ | 1.649 | 0.054 |
| Bibs02 | -0.158 | -0.331 |
| Bibs02c | -0.747 | 0.677 |
| BL6 | 0.619 | 0.814 |
| BL6a | 0.65 | 1.363 |
| BXD01 | 1.03 | 1.566 |
| BXD010 | 1.154 | 1.45 |
| BXD011 | 1.071 | 1.01 |
| BXD03 | 1.07 | 1.073 |
| BXD04 | 0.844 | 2.511 |
| BXD05 | 1.52 | 1.263 |
| BXD06 | 1.139 | 1.226 |
| BXD07 | 0.798 | 0.987 |
| BXD08 | 1.563 | 1.274 |
| BXD09 | 1.182 | 0.841 |
| CAST | 0.846 | 0.939 |
| CCcont | 0.687 | 0.894 |
| DS01 | 0.577 | 0.055 |
| DS02 | 0.227 | -0.723 |
| DS04 | 0.786 | 0.628 |
| DS0c | -0.536 | 0.379 |
| GP01 | 0.454 | 1.245 |
| GP02 | 1.57 | 1.917 |
| GP0c | -0.277 | 1.142 |
| NOD | 3.544 | 1.573 |
| NZO | 1.244 | 0.646 |
| PWK | 0.831 | 0.601 |
| H37Rv_KO_CtpC | 0.911 | 0.859 |
| H37Rv_KO_CtpD | 1.976 | 0.67 |
| H37Rv_KO_Rv1272 | 0.921 | 1.429 |
| H37Rv_KO_SugABC | -0.085 | -1.114 |
| H37Rv_KO_MbtN | 0.841 | -0.609 |
| Trans05 | 0.375 | 0.0 |
| macrophage_unactivated | 0.0 | 0.467 |
| IL1 | 0.4 | -0.489 |
| Rapamycin | -0.97 | 0.117 |
| Tcell | 0.153 | 0.867 |
| GMCSF | 0.356 | -0.267 |
| IFNab | -0.45 | -1.539 |
| IFNg | 0.42 | 0.347 |
| IFNg_GMCSF1 | -0.075 | 0.786 |
| Rv1432_day32 | 1.119 | -1.276 |
| Rv1565c_day32 | 1.579 | 0.706 |
| secA2_input | -1.363 | -1.722 |
| delta_Rv3594 | -0.707 | 0.748 |
| delta_Rv3717 | -0.466 | 0.0 |
| delta_Rv3811 | -0.518 | -0.407 |
| delta_Rv0954 | -1.083 | -1.088 |
| PonA1 | -0.304 | 0.717 |
| EccD1_KO | 0.062 | -0.214 |
| EspI_KO | -1.058 | -0.123 |
| PE35_KO | -0.35 | -0.061 |
| PPE68_KO | -0.32 | 0.198 |
| glycerol2 | -0.21 | -0.357 |
| lignocerate | -0.386 | -0.585 |
| oleate | 0.53 | -0.035 |
| phosphatidylcholine | 0.241 | -0.048 |
| acetate | -0.175 | -1.001 |
| glucAc | -0.436 | -0.975 |
| Rv0950ko | -0.917 | -0.398 |
| Rv1096ko | -0.986 | -1.252 |
| Rv3684ko | -0.439 | -0.242 |
| delta_otsA_trehalose | -0.564 | 1.429 |