Top 10 genes with highest correlation to Rv1508A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2998/- | (cc=0.5325) | info on Rv2998/- |
| Rv1984c/cfp21 | (cc=0.5097) | info on Rv1984c/cfp21 |
| Rv1903/- | (cc=0.5065) | info on Rv1903/- |
| Rv0691c/- | (cc=0.4931) | info on Rv0691c/- |
| Rv2977c/thiL | (cc=0.4739) | info on Rv2977c/thiL |
| Rv1215c/- | (cc=0.4668) | info on Rv1215c/- |
| Rv2819c/- | (cc=0.4578) | info on Rv2819c/- |
| Rv2492/- | (cc=0.4572) | info on Rv2492/- |
| Rv1583c/- | (cc=0.4443) | info on Rv1583c/- |
| Rv2929/- | (cc=0.4418) | info on Rv2929/- |
Correlation of Rv1508A/- with Rv2977c/thiL
Normalized LFCs for Rv1508A/-:
(description and provenance of datasets)
| Rv1508A/- | Rv2977c/thiL | |
| Fe_supp_jason_reseq | 0.608 | -1.994 |
| low_pH_jason_reseq | 0.279 | 0.457 |
| NO_jason_reseq | 0.116 | 1.205 |
| B6_jason_reseq | -0.172 | -1.402 |
| MHCII_jason_reseq | -0.921 | -1.234 |
| Isoniazid02 | -0.662 | 0.0 |
| Rifampicin4 | -0.36 | 0.558 |
| Ethambutol3 | 1.415 | 0.365 |
| Meropenem3 | -0.252 | 1.198 |
| Vancomycin16 | -0.48 | 0.0 |
| Rv2680_day32 | -0.352 | 0.0 |
| H37Rv_KO_MarP | 0.509 | 0.825 |
| hypoxia_3wks | -0.921 | 0.0 |
| hypoxia_6wks | 0.489 | 1.222 |
| glycerol | -0.974 | -0.709 |
| cholesterol | -0.19 | -0.509 |
| AJ | 0.36 | -0.815 |
| Bibs02 | -1.407 | -0.642 |
| Bibs02c | 0.243 | -0.735 |
| BL6 | 0.497 | -0.439 |
| BL6a | -0.07 | -0.696 |
| BXD01 | 0.131 | -0.458 |
| BXD010 | 0.31 | -0.45 |
| BXD011 | -0.3 | -0.448 |
| BXD03 | 0.418 | -0.475 |
| BXD04 | 0.011 | -0.434 |
| BXD05 | -0.331 | -0.473 |
| BXD06 | 0.046 | -0.469 |
| BXD07 | -0.223 | -0.486 |
| BXD08 | -0.122 | -0.467 |
| BXD09 | 0.185 | -0.494 |
| CAST | 0.475 | -0.809 |
| CCcont | -0.21 | -0.525 |
| DS01 | 0.0 | -0.83 |
| DS02 | -0.584 | -0.764 |
| DS04 | -0.178 | -0.682 |
| DS0c | -0.097 | -0.762 |
| GP01 | 0.68 | 2.629 |
| GP02 | 0.084 | 0.353 |
| GP0c | 0.182 | 0.733 |
| NOD | -0.02 | -0.566 |
| NZO | -0.751 | -0.701 |
| PWK | -0.217 | -0.689 |
| H37Rv_KO_CtpC | 0.201 | -0.571 |
| H37Rv_KO_CtpD | 1.846 | 2.576 |
| H37Rv_KO_Rv1272 | 1.664 | -0.495 |
| H37Rv_KO_SugABC | -1.846 | -0.348 |
| H37Rv_KO_MbtN | -0.266 | -0.362 |
| Trans05 | 0.788 | -0.459 |
| macrophage_unactivated | 0.385 | 0.0 |
| IL1 | -0.742 | 0.0 |
| Rapamycin | 0.117 | 0.0 |
| Tcell | 0.283 | 0.0 |
| GMCSF | -0.069 | 0.0 |
| IFNab | -0.363 | 0.0 |
| IFNg | -0.548 | 0.0 |
| IFNg_GMCSF1 | -0.204 | 0.0 |
| Rv1432_day32 | 0.811 | 0.0 |
| Rv1565c_day32 | -0.55 | 0.0 |
| secA2_input | -0.612 | 0.0 |
| delta_Rv3594 | -1.848 | -1.427 |
| delta_Rv3717 | -1.063 | -1.346 |
| delta_Rv3811 | -0.842 | -0.721 |
| delta_Rv0954 | -1.008 | -1.383 |
| PonA1 | -0.374 | -1.235 |
| EccD1_KO | 0.118 | 0.865 |
| EspI_KO | -0.519 | 0.394 |
| PE35_KO | 1.038 | 1.706 |
| PPE68_KO | 1.107 | 1.552 |
| glycerol2 | -0.113 | 0.0 |
| lignocerate | 0.138 | 0.0 |
| oleate | -0.155 | 0.0 |
| phosphatidylcholine | 0.322 | 0.0 |
| acetate | 0.086 | 0.0 |
| glucAc | 0.166 | 0.0 |
| Rv0950ko | -0.163 | -2.222 |
| Rv1096ko | -1.019 | -1.873 |
| Rv3684ko | -0.684 | -1.359 |
| delta_otsA_trehalose | -2.369 | -0.965 |