Top 10 genes with highest correlation to Rv1508A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2998/- | (cc=0.5325) | info on Rv2998/- |
| Rv1984c/cfp21 | (cc=0.5097) | info on Rv1984c/cfp21 |
| Rv1903/- | (cc=0.5065) | info on Rv1903/- |
| Rv0691c/- | (cc=0.4931) | info on Rv0691c/- |
| Rv2977c/thiL | (cc=0.4739) | info on Rv2977c/thiL |
| Rv1215c/- | (cc=0.4668) | info on Rv1215c/- |
| Rv2819c/- | (cc=0.4578) | info on Rv2819c/- |
| Rv2492/- | (cc=0.4572) | info on Rv2492/- |
| Rv1583c/- | (cc=0.4443) | info on Rv1583c/- |
| Rv2929/- | (cc=0.4418) | info on Rv2929/- |
Correlation of Rv1508A/- with Rv2492/-
Normalized LFCs for Rv1508A/-:
(description and provenance of datasets)
| Rv1508A/- | Rv2492/- | |
| Fe_supp_jason_reseq | 0.608 | 1.025 |
| low_pH_jason_reseq | 0.279 | -0.134 |
| NO_jason_reseq | 0.116 | -0.549 |
| B6_jason_reseq | -0.172 | 0.605 |
| MHCII_jason_reseq | -0.921 | 0.244 |
| Isoniazid02 | -0.662 | 0.477 |
| Rifampicin4 | -0.36 | -0.347 |
| Ethambutol3 | 1.415 | 0.541 |
| Meropenem3 | -0.252 | 0.919 |
| Vancomycin16 | -0.48 | -0.523 |
| Rv2680_day32 | -0.352 | -0.883 |
| H37Rv_KO_MarP | 0.509 | 0.209 |
| hypoxia_3wks | -0.921 | 0.128 |
| hypoxia_6wks | 0.489 | 0.198 |
| glycerol | -0.974 | -0.228 |
| cholesterol | -0.19 | 0.076 |
| AJ | 0.36 | 1.044 |
| Bibs02 | -1.407 | 0.23 |
| Bibs02c | 0.243 | -0.647 |
| BL6 | 0.497 | -0.387 |
| BL6a | -0.07 | 0.296 |
| BXD01 | 0.131 | 0.164 |
| BXD010 | 0.31 | -0.034 |
| BXD011 | -0.3 | 1.053 |
| BXD03 | 0.418 | -0.153 |
| BXD04 | 0.011 | 0.912 |
| BXD05 | -0.331 | 0.321 |
| BXD06 | 0.046 | 0.318 |
| BXD07 | -0.223 | 0.498 |
| BXD08 | -0.122 | 0.452 |
| BXD09 | 0.185 | 0.305 |
| CAST | 0.475 | 0.449 |
| CCcont | -0.21 | -0.462 |
| DS01 | 0.0 | 0.063 |
| DS02 | -0.584 | -0.12 |
| DS04 | -0.178 | 0.29 |
| DS0c | -0.097 | 0.471 |
| GP01 | 0.68 | 0.373 |
| GP02 | 0.084 | -0.498 |
| GP0c | 0.182 | 0.694 |
| NOD | -0.02 | -0.539 |
| NZO | -0.751 | 0.967 |
| PWK | -0.217 | 0.293 |
| H37Rv_KO_CtpC | 0.201 | 0.044 |
| H37Rv_KO_CtpD | 1.846 | 0.218 |
| H37Rv_KO_Rv1272 | 1.664 | 0.944 |
| H37Rv_KO_SugABC | -1.846 | -0.99 |
| H37Rv_KO_MbtN | -0.266 | 0.482 |
| Trans05 | 0.788 | 0.0 |
| macrophage_unactivated | 0.385 | -0.234 |
| IL1 | -0.742 | 0.504 |
| Rapamycin | 0.117 | -0.227 |
| Tcell | 0.283 | -0.365 |
| GMCSF | -0.069 | 0.364 |
| IFNab | -0.363 | 0.0 |
| IFNg | -0.548 | 0.096 |
| IFNg_GMCSF1 | -0.204 | -1.012 |
| Rv1432_day32 | 0.811 | 1.197 |
| Rv1565c_day32 | -0.55 | -0.047 |
| secA2_input | -0.612 | -0.836 |
| delta_Rv3594 | -1.848 | -1.491 |
| delta_Rv3717 | -1.063 | -1.165 |
| delta_Rv3811 | -0.842 | -0.986 |
| delta_Rv0954 | -1.008 | -1.018 |
| PonA1 | -0.374 | -1.244 |
| EccD1_KO | 0.118 | 0.908 |
| EspI_KO | -0.519 | 0.106 |
| PE35_KO | 1.038 | 1.479 |
| PPE68_KO | 1.107 | 1.536 |
| glycerol2 | -0.113 | -0.147 |
| lignocerate | 0.138 | -0.537 |
| oleate | -0.155 | 0.33 |
| phosphatidylcholine | 0.322 | -0.073 |
| acetate | 0.086 | -0.909 |
| glucAc | 0.166 | -1.29 |
| Rv0950ko | -0.163 | -0.096 |
| Rv1096ko | -1.019 | -1.348 |
| Rv3684ko | -0.684 | -0.216 |
| delta_otsA_trehalose | -2.369 | -0.487 |