Top 10 genes with highest correlation to Rv1508A/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2998/- | (cc=0.5325) | info on Rv2998/- |
| Rv1984c/cfp21 | (cc=0.5097) | info on Rv1984c/cfp21 |
| Rv1903/- | (cc=0.5065) | info on Rv1903/- |
| Rv0691c/- | (cc=0.4931) | info on Rv0691c/- |
| Rv2977c/thiL | (cc=0.4739) | info on Rv2977c/thiL |
| Rv1215c/- | (cc=0.4668) | info on Rv1215c/- |
| Rv2819c/- | (cc=0.4578) | info on Rv2819c/- |
| Rv2492/- | (cc=0.4572) | info on Rv2492/- |
| Rv1583c/- | (cc=0.4443) | info on Rv1583c/- |
| Rv2929/- | (cc=0.4418) | info on Rv2929/- |
Correlation of Rv1508A/- with Rv1583c/-
Normalized LFCs for Rv1508A/-:
(description and provenance of datasets)
| Rv1508A/- | Rv1583c/- | |
| Fe_supp_jason_reseq | 0.608 | 0.515 |
| low_pH_jason_reseq | 0.279 | 1.549 |
| NO_jason_reseq | 0.116 | 0.832 |
| B6_jason_reseq | -0.172 | -2.401 |
| MHCII_jason_reseq | -0.921 | -1.772 |
| Isoniazid02 | -0.662 | 0.789 |
| Rifampicin4 | -0.36 | 1.18 |
| Ethambutol3 | 1.415 | 0.676 |
| Meropenem3 | -0.252 | -0.246 |
| Vancomycin16 | -0.48 | 0.324 |
| Rv2680_day32 | -0.352 | -1.26 |
| H37Rv_KO_MarP | 0.509 | 0.107 |
| hypoxia_3wks | -0.921 | -0.977 |
| hypoxia_6wks | 0.489 | 0.672 |
| glycerol | -0.974 | 0.0 |
| cholesterol | -0.19 | -0.46 |
| AJ | 0.36 | -1.071 |
| Bibs02 | -1.407 | -0.991 |
| Bibs02c | 0.243 | 0.743 |
| BL6 | 0.497 | 3.191 |
| BL6a | -0.07 | 1.936 |
| BXD01 | 0.131 | 1.298 |
| BXD010 | 0.31 | 1.592 |
| BXD011 | -0.3 | 2.091 |
| BXD03 | 0.418 | 2.033 |
| BXD04 | 0.011 | 1.324 |
| BXD05 | -0.331 | 1.302 |
| BXD06 | 0.046 | 1.925 |
| BXD07 | -0.223 | 2.073 |
| BXD08 | -0.122 | 1.806 |
| BXD09 | 0.185 | 1.625 |
| CAST | 0.475 | 0.736 |
| CCcont | -0.21 | 2.504 |
| DS01 | 0.0 | 0.962 |
| DS02 | -0.584 | 0.054 |
| DS04 | -0.178 | 1.612 |
| DS0c | -0.097 | -1.798 |
| GP01 | 0.68 | 1.857 |
| GP02 | 0.084 | 1.808 |
| GP0c | 0.182 | 2.036 |
| NOD | -0.02 | 0.797 |
| NZO | -0.751 | 0.673 |
| PWK | -0.217 | -0.905 |
| H37Rv_KO_CtpC | 0.201 | 1.404 |
| H37Rv_KO_CtpD | 1.846 | 3.186 |
| H37Rv_KO_Rv1272 | 1.664 | 0.795 |
| H37Rv_KO_SugABC | -1.846 | 1.851 |
| H37Rv_KO_MbtN | -0.266 | 0.987 |
| Trans05 | 0.788 | 1.01 |
| macrophage_unactivated | 0.385 | 0.559 |
| IL1 | -0.742 | 0.0 |
| Rapamycin | 0.117 | 0.862 |
| Tcell | 0.283 | 0.469 |
| GMCSF | -0.069 | 0.805 |
| IFNab | -0.363 | -0.115 |
| IFNg | -0.548 | 1.219 |
| IFNg_GMCSF1 | -0.204 | 0.537 |
| Rv1432_day32 | 0.811 | 1.454 |
| Rv1565c_day32 | -0.55 | 0.526 |
| secA2_input | -0.612 | -0.227 |
| delta_Rv3594 | -1.848 | -1.637 |
| delta_Rv3717 | -1.063 | -0.945 |
| delta_Rv3811 | -0.842 | -0.448 |
| delta_Rv0954 | -1.008 | -0.472 |
| PonA1 | -0.374 | -0.396 |
| EccD1_KO | 0.118 | 2.088 |
| EspI_KO | -0.519 | 1.141 |
| PE35_KO | 1.038 | 1.523 |
| PPE68_KO | 1.107 | 1.638 |
| glycerol2 | -0.113 | 1.813 |
| lignocerate | 0.138 | 2.527 |
| oleate | -0.155 | -2.562 |
| phosphatidylcholine | 0.322 | 1.909 |
| acetate | 0.086 | 2.818 |
| glucAc | 0.166 | 2.145 |
| Rv0950ko | -0.163 | 0.826 |
| Rv1096ko | -1.019 | -1.197 |
| Rv3684ko | -0.684 | -1.251 |
| delta_otsA_trehalose | -2.369 | 0.204 |