Top 10 genes with highest correlation to Rv1441c/PE_PGRS26:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0084/hycD | (cc=0.4991) | info on Rv0084/hycD |
| Rv1070c/echA8 | (cc=0.4633) | info on Rv1070c/echA8 |
| Rv3284/- | (cc=0.4242) | info on Rv3284/- |
| Rv2394/ggtB | (cc=0.4192) | info on Rv2394/ggtB |
| Rv0745/- | (cc=0.4188) | info on Rv0745/- |
| Rv2424c/- | (cc=0.4173) | info on Rv2424c/- |
| Rv1718/- | (cc=0.4156) | info on Rv1718/- |
| Rv0348/- | (cc=0.4072) | info on Rv0348/- |
| Rv2786c/ribF | (cc=0.4045) | info on Rv2786c/ribF |
| Rv3407/vapB47 | (cc=0.4029) | info on Rv3407/vapB47 |
Correlation of Rv1441c/PE_PGRS26 with Rv3284/-
Normalized LFCs for Rv1441c/PE_PGRS26:
(description and provenance of datasets)
| Rv1441c/PE_PGRS26 | Rv3284/- | |
| Fe_supp_jason_reseq | -0.281 | 2.665 |
| low_pH_jason_reseq | -0.326 | -0.785 |
| NO_jason_reseq | -0.039 | 0.0 |
| B6_jason_reseq | -0.235 | 0.246 |
| MHCII_jason_reseq | -1.827 | 0.076 |
| Isoniazid02 | 1.379 | 0.792 |
| Rifampicin4 | 0.471 | 0.0 |
| Ethambutol3 | 1.113 | 0.806 |
| Meropenem3 | 0.273 | 0.701 |
| Vancomycin16 | 0.743 | 0.451 |
| Rv2680_day32 | -0.2 | -2.012 |
| H37Rv_KO_MarP | 0.058 | -0.631 |
| hypoxia_3wks | -0.439 | -1.527 |
| hypoxia_6wks | -0.478 | -0.317 |
| glycerol | 0.825 | 1.893 |
| cholesterol | 1.273 | 2.193 |
| AJ | 0.534 | -0.247 |
| Bibs02 | 0.803 | 1.164 |
| Bibs02c | 0.268 | 1.749 |
| BL6 | -0.37 | -1.479 |
| BL6a | 0.116 | 1.03 |
| BXD01 | 0.113 | -0.988 |
| BXD010 | -0.987 | -1.514 |
| BXD011 | -0.352 | -1.263 |
| BXD03 | 0.722 | -0.934 |
| BXD04 | 0.073 | -0.938 |
| BXD05 | -0.319 | -1.457 |
| BXD06 | -0.267 | -0.838 |
| BXD07 | 0.594 | -0.708 |
| BXD08 | -0.393 | -0.541 |
| BXD09 | 0.142 | -0.883 |
| CAST | 0.232 | -0.616 |
| CCcont | -0.142 | -0.159 |
| DS01 | -0.147 | 2.046 |
| DS02 | 0.911 | 0.994 |
| DS04 | -0.153 | 0.887 |
| DS0c | 1.138 | 2.912 |
| GP01 | 0.099 | -1.167 |
| GP02 | 0.037 | -0.984 |
| GP0c | -0.333 | -1.537 |
| NOD | 0.288 | 2.529 |
| NZO | -0.257 | -1.657 |
| PWK | -0.392 | 0.718 |
| H37Rv_KO_CtpC | 0.432 | -1.35 |
| H37Rv_KO_CtpD | -0.657 | 2.372 |
| H37Rv_KO_Rv1272 | 0.486 | -0.975 |
| H37Rv_KO_SugABC | -0.443 | -1.073 |
| H37Rv_KO_MbtN | -0.828 | -0.856 |
| Trans05 | 0.721 | -1.545 |
| macrophage_unactivated | -0.593 | -1.086 |
| IL1 | 0.139 | 1.032 |
| Rapamycin | 0.509 | 0.506 |
| Tcell | -1.049 | -2.124 |
| GMCSF | -0.042 | -1.376 |
| IFNab | -0.568 | 0.13 |
| IFNg | -0.219 | -0.775 |
| IFNg_GMCSF1 | -0.421 | 1.505 |
| Rv1432_day32 | -0.012 | 0.0 |
| Rv1565c_day32 | -0.599 | 0.0 |
| secA2_input | -1.154 | -0.612 |
| delta_Rv3594 | -0.818 | -1.754 |
| delta_Rv3717 | 0.048 | -2.836 |
| delta_Rv3811 | -0.662 | -3.193 |
| delta_Rv0954 | -0.344 | -0.257 |
| PonA1 | -0.139 | -0.358 |
| EccD1_KO | 0.766 | 2.157 |
| EspI_KO | 1.155 | 1.275 |
| PE35_KO | 1.138 | 0.913 |
| PPE68_KO | 1.526 | 1.001 |
| glycerol2 | 0.233 | 0.744 |
| lignocerate | 0.669 | 0.469 |
| oleate | 0.405 | 0.363 |
| phosphatidylcholine | 0.665 | 0.496 |
| acetate | 1.214 | 1.303 |
| glucAc | 0.438 | -0.176 |
| Rv0950ko | -0.591 | -0.844 |
| Rv1096ko | -0.507 | 2.171 |
| Rv3684ko | -0.508 | 0.138 |
| delta_otsA_trehalose | 0.787 | 1.061 |