TnSeqCorr

Top 10 genes with highest correlation to Rv1440/secG:

update plotcorrelationlink to info on gene
Rv1555/frdD (cc=0.4916) info on Rv1555/frdD
Rv3013/- (cc=0.4229) info on Rv3013/-
Rv0580c/- (cc=0.4077) info on Rv0580c/-
Rv0946c/pgi (cc=0.3975) info on Rv0946c/pgi
Rv3761c/fadE36 (cc=0.3954) info on Rv3761c/fadE36
Rv2943/- (cc=0.39) info on Rv2943/-
Rv2651c/- (cc=0.3553) info on Rv2651c/-
Rv0078A/- (cc=0.3546) info on Rv0078A/-
Rv3073c/- (cc=0.3532) info on Rv3073c/-
Rv2264c/- (cc=0.352) info on Rv2264c/-

Correlation of Rv1440/secG with Rv2651c/-

Normalized LFCs for Rv1440/secG:
(description and provenance of datasets)
Rv1440/secGRv2651c/-
Fe_supp_jason_reseq

0.24

1.086

low_pH_jason_reseq

0.13

-1.419

NO_jason_reseq

0.672

1.394

B6_jason_reseq

2.116

2.983

MHCII_jason_reseq

-0.123

2.155

Isoniazid02

0.0

0.0

Rifampicin4

1.313

0.0

Ethambutol3

2.04

0.0

Meropenem3

0.662

0.0

Vancomycin16

0.698

0.0

Rv2680_day32

-0.336

0.0

H37Rv_KO_MarP

0.062

0.481

hypoxia_3wks

0.415

0.0

hypoxia_6wks

-1.004

0.464

glycerol

-0.531

0.862

cholesterol

1.085

0.55

AJ

0.324

1.193

Bibs02

-1.482

1.219

Bibs02c

-1.696

-1.325

BL6

-0.383

-0.792

BL6a

-1.468

-1.914

BXD01

0.182

-2.32

BXD010

0.042

-1.823

BXD011

-0.088

-2.099

BXD03

0.168

-2.286

BXD04

-0.916

0.32

BXD05

-1.191

-3.372

BXD06

-0.241

-1.178

BXD07

-0.278

-1.714

BXD08

-0.437

-1.573

BXD09

-0.863

-2.15

CAST

-0.606

0.874

CCcont

-1.157

-1.767

DS01

-1.831

-0.902

DS02

-0.15

-0.457

DS04

-0.822

-0.512

DS0c

0.834

0.771

GP01

-1.801

-2.573

GP02

0.04

-1.759

GP0c

-0.235

-3.388

NOD

0.314

-1.352

NZO

0.249

-0.549

PWK

-0.516

0.034

H37Rv_KO_CtpC

-0.231

0.014

H37Rv_KO_CtpD

0.177

-3.301

H37Rv_KO_Rv1272

-0.953

-3.675

H37Rv_KO_SugABC

-1.807

-2.233

H37Rv_KO_MbtN

-1.546

-2.249

Trans05

-2.383

-3.405

macrophage_unactivated

-0.631

-0.754

IL1

0.451

0.792

Rapamycin

0.08

-1.007

Tcell

0.0

0.156

GMCSF

1.201

0.063

IFNab

-0.082

-0.151

IFNg

-0.703

0.975

IFNg_GMCSF1

-0.085

-0.572

Rv1432_day32

1.207

0.0

Rv1565c_day32

0.0

0.0

secA2_input

1.565

1.943

delta_Rv3594

0.757

0.444

delta_Rv3717

-1.178

0.987

delta_Rv3811

0.479

-0.391

delta_Rv0954

-2.421

0.0

PonA1

-0.638

-0.979

EccD1_KO

-2.335

-2.263

EspI_KO

-2.63

-2.447

PE35_KO

1.858

-2.249

PPE68_KO

0.128

-0.873

glycerol2

-1.198

0.0

lignocerate

-1.617

0.712

oleate

-0.102

0.0

phosphatidylcholine

-0.87

0.193

acetate

-0.886

1.779

glucAc

-1.284

0.877

Rv0950ko

0.0

-0.395

Rv1096ko

-1.399

-1.315

Rv3684ko

-0.498

-0.21

delta_otsA_trehalose

0.0

-0.266