Top 10 genes with highest correlation to Rv1429/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1719/- | (cc=0.5422) | info on Rv1719/- |
| Rv3059/cyp136 | (cc=0.5362) | info on Rv3059/cyp136 |
| Rv3058c/- | (cc=0.5355) | info on Rv3058c/- |
| Rv1087A/- | (cc=0.5315) | info on Rv1087A/- |
| Rv1033c/trcR | (cc=0.5261) | info on Rv1033c/trcR |
| Rv2517c/- | (cc=0.522) | info on Rv2517c/- |
| Rv0461/- | (cc=0.5174) | info on Rv0461/- |
| Rv1148c/- | (cc=0.5128) | info on Rv1148c/- |
| Rv2599/- | (cc=0.5029) | info on Rv2599/- |
| Rv3060c/- | (cc=0.4961) | info on Rv3060c/- |
Correlation of Rv1429/- with Rv3059/cyp136
Normalized LFCs for Rv1429/-:
(description and provenance of datasets)
| Rv1429/- | Rv3059/cyp136 | |
| Fe_supp_jason_reseq | 0.548 | -0.786 |
| low_pH_jason_reseq | -0.415 | -1.248 |
| NO_jason_reseq | 0.142 | -0.438 |
| B6_jason_reseq | 0.463 | -0.289 |
| MHCII_jason_reseq | 0.589 | 0.252 |
| Isoniazid02 | -0.314 | -0.421 |
| Rifampicin4 | 0.049 | -0.766 |
| Ethambutol3 | -0.251 | 0.223 |
| Meropenem3 | -0.722 | -0.298 |
| Vancomycin16 | -0.199 | -0.371 |
| Rv2680_day32 | -0.481 | 0.114 |
| H37Rv_KO_MarP | 0.728 | 0.683 |
| hypoxia_3wks | -0.439 | -0.674 |
| hypoxia_6wks | -0.407 | -0.303 |
| glycerol | -0.59 | -0.919 |
| cholesterol | -0.744 | -1.049 |
| AJ | 0.094 | -0.215 |
| Bibs02 | -0.019 | -1.007 |
| Bibs02c | -0.182 | -0.929 |
| BL6 | -0.621 | -1.607 |
| BL6a | -0.276 | -1.482 |
| BXD01 | -0.636 | -1.374 |
| BXD010 | -0.523 | -1.409 |
| BXD011 | 0.197 | -1.538 |
| BXD03 | -0.279 | -1.053 |
| BXD04 | 0.727 | -0.991 |
| BXD05 | -0.007 | -1.387 |
| BXD06 | -0.708 | -1.515 |
| BXD07 | -0.081 | -1.927 |
| BXD08 | 0.169 | -1.873 |
| BXD09 | -0.373 | -1.449 |
| CAST | 0.239 | -0.038 |
| CCcont | -0.899 | -1.415 |
| DS01 | -0.286 | -0.986 |
| DS02 | -0.547 | -0.813 |
| DS04 | 0.53 | -1.054 |
| DS0c | 0.121 | -0.691 |
| GP01 | -0.977 | -0.195 |
| GP02 | -0.177 | -0.71 |
| GP0c | -0.869 | -1.204 |
| NOD | 0.034 | 0.708 |
| NZO | 0.698 | -0.056 |
| PWK | -0.628 | 0.107 |
| H37Rv_KO_CtpC | 0.424 | -0.899 |
| H37Rv_KO_CtpD | 0.246 | -1.081 |
| H37Rv_KO_Rv1272 | -1.513 | -1.077 |
| H37Rv_KO_SugABC | 0.079 | -0.55 |
| H37Rv_KO_MbtN | -0.785 | -1.428 |
| Trans05 | -0.363 | -0.998 |
| macrophage_unactivated | -0.227 | -0.789 |
| IL1 | -0.166 | -0.934 |
| Rapamycin | 0.233 | -1.381 |
| Tcell | -0.209 | -0.779 |
| GMCSF | -0.042 | -1.03 |
| IFNab | -0.638 | -1.379 |
| IFNg | -0.444 | -1.371 |
| IFNg_GMCSF1 | -0.305 | -0.767 |
| Rv1432_day32 | 0.274 | -0.991 |
| Rv1565c_day32 | 0.006 | 0.009 |
| secA2_input | -0.016 | -0.052 |
| delta_Rv3594 | 0.044 | 0.266 |
| delta_Rv3717 | -0.486 | -0.184 |
| delta_Rv3811 | 0.128 | 0.152 |
| delta_Rv0954 | 0.556 | 0.322 |
| PonA1 | 0.763 | 0.759 |
| EccD1_KO | 0.385 | -0.132 |
| EspI_KO | 1.252 | 0.14 |
| PE35_KO | 0.866 | 0.414 |
| PPE68_KO | 0.688 | 0.202 |
| glycerol2 | 1.389 | 2.535 |
| lignocerate | -0.117 | 1.141 |
| oleate | 0.447 | 0.213 |
| phosphatidylcholine | 0.969 | 2.475 |
| acetate | -0.143 | -0.497 |
| glucAc | -0.379 | -0.382 |
| Rv0950ko | 0.431 | -0.311 |
| Rv1096ko | 0.347 | -0.51 |
| Rv3684ko | 0.098 | -0.851 |
| delta_otsA_trehalose | 0.051 | 0.225 |