Top 10 genes with highest correlation to Rv1429/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1719/- | (cc=0.5422) | info on Rv1719/- |
| Rv3059/cyp136 | (cc=0.5362) | info on Rv3059/cyp136 |
| Rv3058c/- | (cc=0.5355) | info on Rv3058c/- |
| Rv1087A/- | (cc=0.5315) | info on Rv1087A/- |
| Rv1033c/trcR | (cc=0.5261) | info on Rv1033c/trcR |
| Rv2517c/- | (cc=0.522) | info on Rv2517c/- |
| Rv0461/- | (cc=0.5174) | info on Rv0461/- |
| Rv1148c/- | (cc=0.5128) | info on Rv1148c/- |
| Rv2599/- | (cc=0.5029) | info on Rv2599/- |
| Rv3060c/- | (cc=0.4961) | info on Rv3060c/- |
Correlation of Rv1429/- with Rv1087A/-
Normalized LFCs for Rv1429/-:
(description and provenance of datasets)
| Rv1429/- | Rv1087A/- | |
| Fe_supp_jason_reseq | 0.548 | 0.453 |
| low_pH_jason_reseq | -0.415 | -1.086 |
| NO_jason_reseq | 0.142 | 0.123 |
| B6_jason_reseq | 0.463 | 1.213 |
| MHCII_jason_reseq | 0.589 | 1.116 |
| Isoniazid02 | -0.314 | 0.035 |
| Rifampicin4 | 0.049 | 0.398 |
| Ethambutol3 | -0.251 | -0.103 |
| Meropenem3 | -0.722 | -1.94 |
| Vancomycin16 | -0.199 | -0.875 |
| Rv2680_day32 | -0.481 | 0.296 |
| H37Rv_KO_MarP | 0.728 | 0.066 |
| hypoxia_3wks | -0.439 | -0.686 |
| hypoxia_6wks | -0.407 | -0.844 |
| glycerol | -0.59 | -1.915 |
| cholesterol | -0.744 | -1.713 |
| AJ | 0.094 | -0.182 |
| Bibs02 | -0.019 | 0.041 |
| Bibs02c | -0.182 | 0.115 |
| BL6 | -0.621 | -0.445 |
| BL6a | -0.276 | -0.099 |
| BXD01 | -0.636 | -0.927 |
| BXD010 | -0.523 | -0.156 |
| BXD011 | 0.197 | -0.253 |
| BXD03 | -0.279 | -0.731 |
| BXD04 | 0.727 | -0.476 |
| BXD05 | -0.007 | -0.178 |
| BXD06 | -0.708 | -1.182 |
| BXD07 | -0.081 | -0.407 |
| BXD08 | 0.169 | -0.761 |
| BXD09 | -0.373 | -0.564 |
| CAST | 0.239 | 0.22 |
| CCcont | -0.899 | -0.654 |
| DS01 | -0.286 | -0.38 |
| DS02 | -0.547 | 0.151 |
| DS04 | 0.53 | -0.389 |
| DS0c | 0.121 | -0.288 |
| GP01 | -0.977 | -1.407 |
| GP02 | -0.177 | -0.019 |
| GP0c | -0.869 | -1.673 |
| NOD | 0.034 | -0.677 |
| NZO | 0.698 | 0.351 |
| PWK | -0.628 | 0.233 |
| H37Rv_KO_CtpC | 0.424 | -0.031 |
| H37Rv_KO_CtpD | 0.246 | 0.673 |
| H37Rv_KO_Rv1272 | -1.513 | 0.166 |
| H37Rv_KO_SugABC | 0.079 | 0.715 |
| H37Rv_KO_MbtN | -0.785 | -0.102 |
| Trans05 | -0.363 | 0.132 |
| macrophage_unactivated | -0.227 | -0.578 |
| IL1 | -0.166 | -0.51 |
| Rapamycin | 0.233 | -1.111 |
| Tcell | -0.209 | -0.727 |
| GMCSF | -0.042 | -0.283 |
| IFNab | -0.638 | -1.246 |
| IFNg | -0.444 | -0.898 |
| IFNg_GMCSF1 | -0.305 | -0.314 |
| Rv1432_day32 | 0.274 | 0.447 |
| Rv1565c_day32 | 0.006 | 0.423 |
| secA2_input | -0.016 | -0.823 |
| delta_Rv3594 | 0.044 | 0.032 |
| delta_Rv3717 | -0.486 | -1.053 |
| delta_Rv3811 | 0.128 | -1.044 |
| delta_Rv0954 | 0.556 | -0.009 |
| PonA1 | 0.763 | -0.631 |
| EccD1_KO | 0.385 | 0.671 |
| EspI_KO | 1.252 | 0.873 |
| PE35_KO | 0.866 | 0.187 |
| PPE68_KO | 0.688 | -0.038 |
| glycerol2 | 1.389 | 0.581 |
| lignocerate | -0.117 | 0.592 |
| oleate | 0.447 | 0.296 |
| phosphatidylcholine | 0.969 | 0.769 |
| acetate | -0.143 | 0.326 |
| glucAc | -0.379 | 0.52 |
| Rv0950ko | 0.431 | 0.365 |
| Rv1096ko | 0.347 | -0.075 |
| Rv3684ko | 0.098 | -0.151 |
| delta_otsA_trehalose | 0.051 | -0.724 |