Top 10 genes with highest correlation to Rv1408/rpe:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2333c/stp | (cc=0.5132) | info on Rv2333c/stp |
| Rv2114/- | (cc=0.4682) | info on Rv2114/- |
| Rv3433c/- | (cc=0.4629) | info on Rv3433c/- |
| Rv0026/- | (cc=0.4613) | info on Rv0026/- |
| Rv0860/fadB | (cc=0.4213) | info on Rv0860/fadB |
| Rv2732c/- | (cc=0.4206) | info on Rv2732c/- |
| Rv2470/glbO | (cc=0.4145) | info on Rv2470/glbO |
| Rv1173/fbiC | (cc=0.4052) | info on Rv1173/fbiC |
| Rv0859/fadA | (cc=0.4008) | info on Rv0859/fadA |
| Rv3238c/- | (cc=0.3928) | info on Rv3238c/- |
Correlation of Rv1408/rpe with Rv3433c/-
Normalized LFCs for Rv1408/rpe:
(description and provenance of datasets)
| Rv1408/rpe | Rv3433c/- | |
| Fe_supp_jason_reseq | 0.458 | 1.579 |
| low_pH_jason_reseq | -0.785 | -1.367 |
| NO_jason_reseq | -1.231 | -2.945 |
| B6_jason_reseq | -0.403 | -1.446 |
| MHCII_jason_reseq | 0.283 | -0.497 |
| Isoniazid02 | 2.123 | 2.231 |
| Rifampicin4 | 0.739 | 1.083 |
| Ethambutol3 | 0.981 | 0.672 |
| Meropenem3 | 0.497 | 0.334 |
| Vancomycin16 | -0.512 | 0.273 |
| Rv2680_day32 | 0.0 | -0.375 |
| H37Rv_KO_MarP | 1.04 | 0.945 |
| hypoxia_3wks | -0.77 | -4.243 |
| hypoxia_6wks | -1.416 | -3.926 |
| glycerol | -0.146 | 0.513 |
| cholesterol | -0.216 | 1.221 |
| AJ | 0.442 | -0.086 |
| Bibs02 | 0.0 | 0.662 |
| Bibs02c | 0.838 | 0.411 |
| BL6 | -0.091 | -0.303 |
| BL6a | 0.489 | 0.267 |
| BXD01 | -0.304 | -0.149 |
| BXD010 | -0.415 | -0.566 |
| BXD011 | 0.83 | 0.0 |
| BXD03 | 0.334 | -0.525 |
| BXD04 | 0.66 | 0.044 |
| BXD05 | 0.332 | -0.595 |
| BXD06 | 0.254 | -0.386 |
| BXD07 | 0.182 | -0.612 |
| BXD08 | -0.31 | -0.322 |
| BXD09 | 0.0 | -0.34 |
| CAST | -0.167 | -1.753 |
| CCcont | 0.974 | 2.317 |
| DS01 | 0.159 | -0.683 |
| DS02 | -0.325 | -1.498 |
| DS04 | 1.405 | -0.301 |
| DS0c | 1.332 | 0.996 |
| GP01 | -0.32 | 0.562 |
| GP02 | -0.353 | -0.698 |
| GP0c | -0.094 | 0.437 |
| NOD | 0.555 | -1.119 |
| NZO | -0.646 | -1.114 |
| PWK | 0.374 | 0.136 |
| H37Rv_KO_CtpC | -0.688 | -1.01 |
| H37Rv_KO_CtpD | -0.41 | 0.64 |
| H37Rv_KO_Rv1272 | 0.0 | 1.458 |
| H37Rv_KO_SugABC | -0.321 | -0.24 |
| H37Rv_KO_MbtN | 0.0 | 0.689 |
| Trans05 | 0.0 | -0.577 |
| macrophage_unactivated | -0.537 | 0.83 |
| IL1 | 1.05 | -1.797 |
| Rapamycin | -0.252 | -0.988 |
| Tcell | -1.183 | -3.125 |
| GMCSF | -1.238 | 0.314 |
| IFNab | 1.07 | 1.097 |
| IFNg | 0.946 | -1.97 |
| IFNg_GMCSF1 | 0.698 | -1.904 |
| Rv1432_day32 | 0.0 | -0.894 |
| Rv1565c_day32 | 0.147 | -0.235 |
| secA2_input | -0.952 | -0.384 |
| delta_Rv3594 | 0.402 | 0.145 |
| delta_Rv3717 | -0.522 | -0.76 |
| delta_Rv3811 | -0.348 | 0.141 |
| delta_Rv0954 | 0.693 | 1.268 |
| PonA1 | -0.085 | 0.15 |
| EccD1_KO | 0.526 | -0.201 |
| EspI_KO | 1.417 | 0.374 |
| PE35_KO | 0.683 | 0.149 |
| PPE68_KO | 0.262 | 0.266 |
| glycerol2 | -0.88 | 1.279 |
| lignocerate | -0.106 | -1.777 |
| oleate | -0.713 | -0.924 |
| phosphatidylcholine | -0.542 | -0.913 |
| acetate | 0.389 | -0.095 |
| glucAc | 0.797 | -0.423 |
| Rv0950ko | 0.0 | 0.024 |
| Rv1096ko | -0.971 | -0.166 |
| Rv3684ko | -0.825 | -0.763 |
| delta_otsA_trehalose | -0.199 | -0.111 |