Top 10 genes with highest correlation to Rv1408/rpe:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2333c/stp | (cc=0.5132) | info on Rv2333c/stp |
| Rv2114/- | (cc=0.4682) | info on Rv2114/- |
| Rv3433c/- | (cc=0.4629) | info on Rv3433c/- |
| Rv0026/- | (cc=0.4613) | info on Rv0026/- |
| Rv0860/fadB | (cc=0.4213) | info on Rv0860/fadB |
| Rv2732c/- | (cc=0.4206) | info on Rv2732c/- |
| Rv2470/glbO | (cc=0.4145) | info on Rv2470/glbO |
| Rv1173/fbiC | (cc=0.4052) | info on Rv1173/fbiC |
| Rv0859/fadA | (cc=0.4008) | info on Rv0859/fadA |
| Rv3238c/- | (cc=0.3928) | info on Rv3238c/- |
Correlation of Rv1408/rpe with Rv2114/-
Normalized LFCs for Rv1408/rpe:
(description and provenance of datasets)
| Rv1408/rpe | Rv2114/- | |
| Fe_supp_jason_reseq | 0.458 | -0.166 |
| low_pH_jason_reseq | -0.785 | -0.244 |
| NO_jason_reseq | -1.231 | -0.347 |
| B6_jason_reseq | -0.403 | 0.328 |
| MHCII_jason_reseq | 0.283 | 1.082 |
| Isoniazid02 | 2.123 | 0.355 |
| Rifampicin4 | 0.739 | 0.498 |
| Ethambutol3 | 0.981 | 0.824 |
| Meropenem3 | 0.497 | -0.317 |
| Vancomycin16 | -0.512 | 0.045 |
| Rv2680_day32 | 0.0 | -0.412 |
| H37Rv_KO_MarP | 1.04 | 0.841 |
| hypoxia_3wks | -0.77 | -0.957 |
| hypoxia_6wks | -1.416 | -0.37 |
| glycerol | -0.146 | 0.455 |
| cholesterol | -0.216 | 0.313 |
| AJ | 0.442 | -0.064 |
| Bibs02 | 0.0 | 0.261 |
| Bibs02c | 0.838 | 1.126 |
| BL6 | -0.091 | -0.568 |
| BL6a | 0.489 | 0.176 |
| BXD01 | -0.304 | -0.835 |
| BXD010 | -0.415 | 0.06 |
| BXD011 | 0.83 | 0.419 |
| BXD03 | 0.334 | 0.098 |
| BXD04 | 0.66 | -0.528 |
| BXD05 | 0.332 | -0.008 |
| BXD06 | 0.254 | -0.511 |
| BXD07 | 0.182 | -0.263 |
| BXD08 | -0.31 | -0.654 |
| BXD09 | 0.0 | -0.393 |
| CAST | -0.167 | -0.164 |
| CCcont | 0.974 | -0.263 |
| DS01 | 0.159 | 1.013 |
| DS02 | -0.325 | 0.701 |
| DS04 | 1.405 | 1.204 |
| DS0c | 1.332 | 0.751 |
| GP01 | -0.32 | 0.733 |
| GP02 | -0.353 | -0.77 |
| GP0c | -0.094 | -0.737 |
| NOD | 0.555 | 0.242 |
| NZO | -0.646 | 0.036 |
| PWK | 0.374 | 0.058 |
| H37Rv_KO_CtpC | -0.688 | -0.657 |
| H37Rv_KO_CtpD | -0.41 | 0.194 |
| H37Rv_KO_Rv1272 | 0.0 | 0.568 |
| H37Rv_KO_SugABC | -0.321 | 0.403 |
| H37Rv_KO_MbtN | 0.0 | 0.103 |
| Trans05 | 0.0 | 0.583 |
| macrophage_unactivated | -0.537 | -0.366 |
| IL1 | 1.05 | 0.347 |
| Rapamycin | -0.252 | 0.512 |
| Tcell | -1.183 | -0.45 |
| GMCSF | -1.238 | 0.092 |
| IFNab | 1.07 | 0.45 |
| IFNg | 0.946 | -0.096 |
| IFNg_GMCSF1 | 0.698 | 0.173 |
| Rv1432_day32 | 0.0 | -0.357 |
| Rv1565c_day32 | 0.147 | 0.445 |
| secA2_input | -0.952 | -0.515 |
| delta_Rv3594 | 0.402 | 1.247 |
| delta_Rv3717 | -0.522 | 0.166 |
| delta_Rv3811 | -0.348 | 0.515 |
| delta_Rv0954 | 0.693 | 1.269 |
| PonA1 | -0.085 | 0.464 |
| EccD1_KO | 0.526 | 0.395 |
| EspI_KO | 1.417 | -0.282 |
| PE35_KO | 0.683 | 0.041 |
| PPE68_KO | 0.262 | -0.333 |
| glycerol2 | -0.88 | -0.642 |
| lignocerate | -0.106 | -0.365 |
| oleate | -0.713 | -0.583 |
| phosphatidylcholine | -0.542 | -0.333 |
| acetate | 0.389 | 0.185 |
| glucAc | 0.797 | 1.76 |
| Rv0950ko | 0.0 | 0.22 |
| Rv1096ko | -0.971 | -0.377 |
| Rv3684ko | -0.825 | -0.373 |
| delta_otsA_trehalose | -0.199 | -0.126 |