TnSeqCorr

Top 10 genes with highest correlation to Rv1400c/lipI:

update plotcorrelationlink to info on gene
Rv3702c/- (cc=0.49) info on Rv3702c/-
Rv3016/lpqA (cc=0.4824) info on Rv3016/lpqA
Rv1106c/- (cc=0.4154) info on Rv1106c/-
Rv1358/- (cc=0.4148) info on Rv1358/-
Rv1946c/lppG (cc=0.4121) info on Rv1946c/lppG
Rv1436/gap (cc=0.4039) info on Rv1436/gap
Rv2537c/aroD (cc=0.4031) info on Rv2537c/aroD
Rv1875/- (cc=0.4003) info on Rv1875/-
Rv2734/- (cc=0.3977) info on Rv2734/-
Rv1424c/- (cc=0.3948) info on Rv1424c/-

Correlation of Rv1400c/lipI with Rv3016/lpqA

Normalized LFCs for Rv1400c/lipI:
(description and provenance of datasets)
Rv1400c/lipIRv3016/lpqA
Fe_supp_jason_reseq

0.276

-1.077

low_pH_jason_reseq

0.427

-0.43

NO_jason_reseq

0.772

-0.068

B6_jason_reseq

0.326

-1.444

MHCII_jason_reseq

-0.932

-1.914

Isoniazid02

0.163

0.087

Rifampicin4

0.588

-0.198

Ethambutol3

0.18

0.277

Meropenem3

0.892

2.468

Vancomycin16

0.393

-0.287

Rv2680_day32

-1.139

-0.452

H37Rv_KO_MarP

-1.204

-0.078

hypoxia_3wks

-0.132

0.128

hypoxia_6wks

0.779

-0.069

glycerol

-0.363

-0.895

cholesterol

-0.898

-1.184

AJ

-1.114

-0.361

Bibs02

-0.212

-1.131

Bibs02c

0.218

0.614

BL6

0.53

1.181

BL6a

0.35

0.974

BXD01

0.73

0.239

BXD010

-0.072

0.142

BXD011

0.869

0.567

BXD03

-0.076

1.236

BXD04

-0.034

0.65

BXD05

0.0

0.302

BXD06

0.236

0.463

BXD07

0.144

0.681

BXD08

0.106

0.154

BXD09

-0.208

0.076

CAST

-0.34

0.025

CCcont

-0.173

0.547

DS01

-0.065

-0.642

DS02

-0.391

-0.243

DS04

0.557

-0.157

DS0c

-0.123

-0.872

GP01

0.127

0.932

GP02

-0.023

0.241

GP0c

-0.112

-0.372

NOD

-0.332

-1.113

NZO

-0.295

-0.644

PWK

0.521

-0.59

H37Rv_KO_CtpC

-1.365

0.393

H37Rv_KO_CtpD

-0.405

0.523

H37Rv_KO_Rv1272

2.418

1.561

H37Rv_KO_SugABC

1.65

0.987

H37Rv_KO_MbtN

-1.001

-0.222

Trans05

2.361

0.879

macrophage_unactivated

0.751

0.647

IL1

-0.11

0.314

Rapamycin

0.221

0.779

Tcell

0.978

0.02

GMCSF

0.372

0.475

IFNab

1.339

0.481

IFNg

1.184

0.297

IFNg_GMCSF1

0.336

0.798

Rv1432_day32

0.0

-0.433

Rv1565c_day32

-0.137

0.208

secA2_input

0.0

0.38

delta_Rv3594

0.125

1.017

delta_Rv3717

-0.148

0.254

delta_Rv3811

-0.269

0.787

delta_Rv0954

0.394

0.373

PonA1

0.063

-0.577

EccD1_KO

0.888

0.714

EspI_KO

0.12

0.311

PE35_KO

1.706

0.907

PPE68_KO

1.395

1.193

glycerol2

-0.835

-0.172

lignocerate

-0.532

0.045

oleate

-0.096

-0.125

phosphatidylcholine

-0.374

0.095

acetate

-0.535

-0.386

glucAc

-0.724

0.091

Rv0950ko

-0.181

0.44

Rv1096ko

0.0

0.042

Rv3684ko

0.282

0.023

delta_otsA_trehalose

0.139

0.615