Top 10 genes with highest correlation to Rv1221/sigE:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1514c/- | (cc=0.5759) | info on Rv1514c/- |
| Rv1388/mihF | (cc=0.533) | info on Rv1388/mihF |
| Rv2359/zur | (cc=0.5326) | info on Rv2359/zur |
| Rv0910/- | (cc=0.5261) | info on Rv0910/- |
| Rv1473/- | (cc=0.5212) | info on Rv1473/- |
| Rv1631/coaE | (cc=0.4953) | info on Rv1631/coaE |
| Rv0634c/- | (cc=0.4945) | info on Rv0634c/- |
| Rv3603c/- | (cc=0.491) | info on Rv3603c/- |
| Rv1182/papA3 | (cc=0.489) | info on Rv1182/papA3 |
| Rv3827c/- | (cc=0.4885) | info on Rv3827c/- |
Correlation of Rv1221/sigE with Rv1473/-
Normalized LFCs for Rv1221/sigE:
(description and provenance of datasets)
| Rv1221/sigE | Rv1473/- | |
| Fe_supp_jason_reseq | 2.602 | 1.664 |
| low_pH_jason_reseq | 0.156 | 0.179 |
| NO_jason_reseq | 0.895 | 0.281 |
| B6_jason_reseq | 0.752 | -0.421 |
| MHCII_jason_reseq | 1.311 | 1.03 |
| Isoniazid02 | 0.682 | -0.141 |
| Rifampicin4 | 0.146 | 0.141 |
| Ethambutol3 | -0.646 | 0.353 |
| Meropenem3 | -0.212 | 0.545 |
| Vancomycin16 | -0.305 | 0.403 |
| Rv2680_day32 | 0.651 | 1.437 |
| H37Rv_KO_MarP | -0.313 | -0.313 |
| hypoxia_3wks | -0.128 | -1.132 |
| hypoxia_6wks | -1.495 | -2.088 |
| glycerol | -0.967 | 2.61 |
| cholesterol | -0.197 | 0.871 |
| AJ | -0.373 | -1.55 |
| Bibs02 | -0.698 | -0.167 |
| Bibs02c | -0.39 | 0.674 |
| BL6 | -1.107 | -1.06 |
| BL6a | -0.472 | 0.057 |
| BXD01 | -0.58 | -1.386 |
| BXD010 | -0.749 | -1.363 |
| BXD011 | -1.333 | -1.165 |
| BXD03 | -0.79 | -1.553 |
| BXD04 | -1.035 | -1.316 |
| BXD05 | 0.33 | -1.055 |
| BXD06 | -0.832 | -1.221 |
| BXD07 | -1.713 | -1.174 |
| BXD08 | -1.392 | -1.527 |
| BXD09 | -0.374 | -1.286 |
| CAST | -1.927 | -1.952 |
| CCcont | -0.397 | 1.227 |
| DS01 | 0.286 | -0.14 |
| DS02 | -0.35 | -1.226 |
| DS04 | -0.929 | -1.192 |
| DS0c | -0.193 | -0.064 |
| GP01 | -1.292 | 0.811 |
| GP02 | -0.92 | -0.603 |
| GP0c | -1.702 | -0.391 |
| NOD | -1.487 | -1.38 |
| NZO | -1.669 | -1.825 |
| PWK | -1.147 | -2.087 |
| H37Rv_KO_CtpC | -1.359 | -0.835 |
| H37Rv_KO_CtpD | -0.113 | 0.173 |
| H37Rv_KO_Rv1272 | -1.846 | -0.942 |
| H37Rv_KO_SugABC | -1.159 | 1.128 |
| H37Rv_KO_MbtN | -0.459 | 0.086 |
| Trans05 | 0.23 | -0.803 |
| macrophage_unactivated | 0.202 | 0.802 |
| IL1 | -0.629 | -1.344 |
| Rapamycin | -0.424 | -0.175 |
| Tcell | -1.212 | -1.004 |
| GMCSF | -0.269 | -0.15 |
| IFNab | -0.641 | -0.348 |
| IFNg | -0.994 | -1.638 |
| IFNg_GMCSF1 | -2.049 | -0.757 |
| Rv1432_day32 | -0.139 | 0.992 |
| Rv1565c_day32 | 0.158 | 1.515 |
| secA2_input | -0.931 | 1.623 |
| delta_Rv3594 | 0.057 | 2.688 |
| delta_Rv3717 | -0.736 | 0.82 |
| delta_Rv3811 | -0.171 | 2.104 |
| delta_Rv0954 | -0.149 | 1.005 |
| PonA1 | 1.154 | 1.445 |
| EccD1_KO | -0.28 | 0.539 |
| EspI_KO | 1.383 | 1.474 |
| PE35_KO | 2.856 | 1.193 |
| PPE68_KO | 2.003 | 1.6 |
| glycerol2 | 0.42 | -0.615 |
| lignocerate | -0.647 | -0.785 |
| oleate | 0.457 | -1.195 |
| phosphatidylcholine | 0.513 | -0.803 |
| acetate | -0.949 | 0.527 |
| glucAc | -1.283 | 0.707 |
| Rv0950ko | -1.643 | -0.932 |
| Rv1096ko | -1.644 | -1.559 |
| Rv3684ko | -2.05 | -1.228 |
| delta_otsA_trehalose | 0.322 | 1.844 |