Top 10 genes with highest correlation to Rv1221/sigE:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1514c/- | (cc=0.5759) | info on Rv1514c/- |
| Rv1388/mihF | (cc=0.533) | info on Rv1388/mihF |
| Rv2359/zur | (cc=0.5326) | info on Rv2359/zur |
| Rv0910/- | (cc=0.5261) | info on Rv0910/- |
| Rv1473/- | (cc=0.5212) | info on Rv1473/- |
| Rv1631/coaE | (cc=0.4953) | info on Rv1631/coaE |
| Rv0634c/- | (cc=0.4945) | info on Rv0634c/- |
| Rv3603c/- | (cc=0.491) | info on Rv3603c/- |
| Rv1182/papA3 | (cc=0.489) | info on Rv1182/papA3 |
| Rv3827c/- | (cc=0.4885) | info on Rv3827c/- |
Correlation of Rv1221/sigE with Rv1514c/-
Normalized LFCs for Rv1221/sigE:
(description and provenance of datasets)
| Rv1221/sigE | Rv1514c/- | |
| Fe_supp_jason_reseq | 2.602 | 1.347 |
| low_pH_jason_reseq | 0.156 | 0.361 |
| NO_jason_reseq | 0.895 | 0.772 |
| B6_jason_reseq | 0.752 | 1.724 |
| MHCII_jason_reseq | 1.311 | 1.487 |
| Isoniazid02 | 0.682 | -0.621 |
| Rifampicin4 | 0.146 | -0.422 |
| Ethambutol3 | -0.646 | 0.975 |
| Meropenem3 | -0.212 | -0.187 |
| Vancomycin16 | -0.305 | -0.414 |
| Rv2680_day32 | 0.651 | -0.803 |
| H37Rv_KO_MarP | -0.313 | 0.721 |
| hypoxia_3wks | -0.128 | 0.199 |
| hypoxia_6wks | -1.495 | -0.455 |
| glycerol | -0.967 | 0.989 |
| cholesterol | -0.197 | 0.095 |
| AJ | -0.373 | 0.432 |
| Bibs02 | -0.698 | 0.277 |
| Bibs02c | -0.39 | 0.593 |
| BL6 | -1.107 | -0.088 |
| BL6a | -0.472 | -0.11 |
| BXD01 | -0.58 | -0.534 |
| BXD010 | -0.749 | -0.356 |
| BXD011 | -1.333 | -0.354 |
| BXD03 | -0.79 | -0.697 |
| BXD04 | -1.035 | -0.666 |
| BXD05 | 0.33 | -0.175 |
| BXD06 | -0.832 | -0.602 |
| BXD07 | -1.713 | -0.117 |
| BXD08 | -1.392 | -0.876 |
| BXD09 | -0.374 | -0.272 |
| CAST | -1.927 | -0.37 |
| CCcont | -0.397 | 0.079 |
| DS01 | 0.286 | 0.094 |
| DS02 | -0.35 | 0.25 |
| DS04 | -0.929 | 1.03 |
| DS0c | -0.193 | 0.379 |
| GP01 | -1.292 | 0.014 |
| GP02 | -0.92 | -1.422 |
| GP0c | -1.702 | -0.924 |
| NOD | -1.487 | 0.542 |
| NZO | -1.669 | -0.199 |
| PWK | -1.147 | -0.054 |
| H37Rv_KO_CtpC | -1.359 | -1.154 |
| H37Rv_KO_CtpD | -0.113 | 0.067 |
| H37Rv_KO_Rv1272 | -1.846 | -0.759 |
| H37Rv_KO_SugABC | -1.159 | 0.077 |
| H37Rv_KO_MbtN | -0.459 | -0.465 |
| Trans05 | 0.23 | 0.243 |
| macrophage_unactivated | 0.202 | -0.486 |
| IL1 | -0.629 | 0.525 |
| Rapamycin | -0.424 | 0.187 |
| Tcell | -1.212 | -0.209 |
| GMCSF | -0.269 | -0.795 |
| IFNab | -0.641 | -0.193 |
| IFNg | -0.994 | 0.569 |
| IFNg_GMCSF1 | -2.049 | 0.377 |
| Rv1432_day32 | -0.139 | -0.902 |
| Rv1565c_day32 | 0.158 | 0.223 |
| secA2_input | -0.931 | -1.154 |
| delta_Rv3594 | 0.057 | 1.244 |
| delta_Rv3717 | -0.736 | 0.048 |
| delta_Rv3811 | -0.171 | 0.73 |
| delta_Rv0954 | -0.149 | 0.049 |
| PonA1 | 1.154 | 0.629 |
| EccD1_KO | -0.28 | 1.394 |
| EspI_KO | 1.383 | 2.145 |
| PE35_KO | 2.856 | 1.852 |
| PPE68_KO | 2.003 | 2.755 |
| glycerol2 | 0.42 | 0.593 |
| lignocerate | -0.647 | 0.675 |
| oleate | 0.457 | 0.465 |
| phosphatidylcholine | 0.513 | 0.28 |
| acetate | -0.949 | 0.504 |
| glucAc | -1.283 | 0.811 |
| Rv0950ko | -1.643 | -1.182 |
| Rv1096ko | -1.644 | -0.609 |
| Rv3684ko | -2.05 | -0.534 |
| delta_otsA_trehalose | 0.322 | -0.139 |