Top 10 genes with highest correlation to Rv1171/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0730/- | (cc=0.5684) | info on Rv0730/- |
| Rv3445c/esxU | (cc=0.5069) | info on Rv3445c/esxU |
| Rv3062/ligB | (cc=0.5029) | info on Rv3062/ligB |
| Rv0758/phoR | (cc=0.4931) | info on Rv0758/phoR |
| Rv3448/eccD4 | (cc=0.4929) | info on Rv3448/eccD4 |
| Rv1974/- | (cc=0.4905) | info on Rv1974/- |
| Rv3136/PPE51 | (cc=0.4858) | info on Rv3136/PPE51 |
| Rv2944/- | (cc=0.483) | info on Rv2944/- |
| Rv1758/cut1 | (cc=0.4827) | info on Rv1758/cut1 |
| Rv1935c/echA13 | (cc=0.4784) | info on Rv1935c/echA13 |
Correlation of Rv1171/- with Rv3448/eccD4
Normalized LFCs for Rv1171/-:
(description and provenance of datasets)
| Rv1171/- | Rv3448/eccD4 | |
| Fe_supp_jason_reseq | -0.527 | -0.796 |
| low_pH_jason_reseq | -0.723 | -0.294 |
| NO_jason_reseq | 0.488 | -0.533 |
| B6_jason_reseq | -0.214 | -0.165 |
| MHCII_jason_reseq | 0.564 | 0.725 |
| Isoniazid02 | 0.333 | 0.185 |
| Rifampicin4 | -0.255 | 0.558 |
| Ethambutol3 | -0.485 | 0.609 |
| Meropenem3 | 0.42 | 0.103 |
| Vancomycin16 | 0.13 | 0.546 |
| Rv2680_day32 | 1.924 | 0.449 |
| H37Rv_KO_MarP | 0.989 | 0.174 |
| hypoxia_3wks | -0.02 | -0.148 |
| hypoxia_6wks | -0.071 | 0.038 |
| glycerol | -1.972 | 0.0 |
| cholesterol | -0.391 | -0.183 |
| AJ | -0.185 | -0.202 |
| Bibs02 | -0.106 | -0.97 |
| Bibs02c | 0.832 | -0.182 |
| BL6 | -0.423 | -0.967 |
| BL6a | 0.331 | -0.416 |
| BXD01 | -0.41 | -0.331 |
| BXD010 | -1.196 | -0.654 |
| BXD011 | -0.89 | -0.403 |
| BXD03 | -1.933 | -0.717 |
| BXD04 | -0.334 | -0.68 |
| BXD05 | -0.617 | -0.687 |
| BXD06 | -0.84 | -0.734 |
| BXD07 | -0.161 | -0.194 |
| BXD08 | -0.181 | -0.186 |
| BXD09 | -0.828 | -0.514 |
| CAST | -0.374 | -0.517 |
| CCcont | -0.442 | -0.521 |
| DS01 | 0.118 | -0.33 |
| DS02 | 0.25 | -0.106 |
| DS04 | -0.252 | 0.0 |
| DS0c | -0.531 | 0.443 |
| GP01 | -1.249 | -0.715 |
| GP02 | 0.066 | 0.248 |
| GP0c | -0.404 | -0.614 |
| NOD | -1.131 | -0.376 |
| NZO | 0.513 | -0.147 |
| PWK | -0.53 | -0.718 |
| H37Rv_KO_CtpC | -0.601 | 0.019 |
| H37Rv_KO_CtpD | 0.277 | 0.195 |
| H37Rv_KO_Rv1272 | -1.346 | -1.797 |
| H37Rv_KO_SugABC | -1.121 | 0.011 |
| H37Rv_KO_MbtN | -1.854 | -0.231 |
| Trans05 | -1.534 | -0.312 |
| macrophage_unactivated | -0.546 | -0.691 |
| IL1 | -0.258 | -0.727 |
| Rapamycin | 0.417 | 0.267 |
| Tcell | -0.375 | -0.714 |
| GMCSF | 0.433 | -0.718 |
| IFNab | -0.819 | 0.2 |
| IFNg | -0.203 | -0.313 |
| IFNg_GMCSF1 | -0.116 | -1.031 |
| Rv1432_day32 | 0.505 | 1.063 |
| Rv1565c_day32 | -0.082 | -0.172 |
| secA2_input | -0.158 | -0.197 |
| delta_Rv3594 | -0.086 | 0.714 |
| delta_Rv3717 | 0.049 | 0.97 |
| delta_Rv3811 | -0.37 | 0.504 |
| delta_Rv0954 | 0.248 | 1.089 |
| PonA1 | 0.623 | 0.466 |
| EccD1_KO | 0.092 | -0.812 |
| EspI_KO | 1.326 | 0.445 |
| PE35_KO | 0.414 | -0.443 |
| PPE68_KO | -0.307 | 0.0 |
| glycerol2 | 0.416 | 0.688 |
| lignocerate | 0.379 | 0.447 |
| oleate | 0.914 | 0.759 |
| phosphatidylcholine | 0.475 | 0.709 |
| acetate | -0.07 | -0.417 |
| glucAc | -0.379 | -0.234 |
| Rv0950ko | 0.63 | -0.504 |
| Rv1096ko | 1.068 | 1.348 |
| Rv3684ko | 1.136 | 0.861 |
| delta_otsA_trehalose | -0.578 | -0.412 |