Top 10 genes with highest correlation to Rv1171/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0730/- | (cc=0.5684) | info on Rv0730/- |
| Rv3445c/esxU | (cc=0.5069) | info on Rv3445c/esxU |
| Rv3062/ligB | (cc=0.5029) | info on Rv3062/ligB |
| Rv0758/phoR | (cc=0.4931) | info on Rv0758/phoR |
| Rv3448/eccD4 | (cc=0.4929) | info on Rv3448/eccD4 |
| Rv1974/- | (cc=0.4905) | info on Rv1974/- |
| Rv3136/PPE51 | (cc=0.4858) | info on Rv3136/PPE51 |
| Rv2944/- | (cc=0.483) | info on Rv2944/- |
| Rv1758/cut1 | (cc=0.4827) | info on Rv1758/cut1 |
| Rv1935c/echA13 | (cc=0.4784) | info on Rv1935c/echA13 |
Correlation of Rv1171/- with Rv0758/phoR
Normalized LFCs for Rv1171/-:
(description and provenance of datasets)
| Rv1171/- | Rv0758/phoR | |
| Fe_supp_jason_reseq | -0.527 | 1.258 |
| low_pH_jason_reseq | -0.723 | 1.807 |
| NO_jason_reseq | 0.488 | -3.087 |
| B6_jason_reseq | -0.214 | 2.199 |
| MHCII_jason_reseq | 0.564 | -0.252 |
| Isoniazid02 | 0.333 | -3.111 |
| Rifampicin4 | -0.255 | -2.055 |
| Ethambutol3 | -0.485 | 0.276 |
| Meropenem3 | 0.42 | 2.037 |
| Vancomycin16 | 0.13 | -0.987 |
| Rv2680_day32 | 1.924 | 1.87 |
| H37Rv_KO_MarP | 0.989 | 4.04 |
| hypoxia_3wks | -0.02 | -1.519 |
| hypoxia_6wks | -0.071 | -3.418 |
| glycerol | -1.972 | -6.0 |
| cholesterol | -0.391 | -5.874 |
| AJ | -0.185 | -5.577 |
| Bibs02 | -0.106 | -3.968 |
| Bibs02c | 0.832 | -3.403 |
| BL6 | -0.423 | -5.388 |
| BL6a | 0.331 | -4.919 |
| BXD01 | -0.41 | -5.61 |
| BXD010 | -1.196 | -4.365 |
| BXD011 | -0.89 | -5.073 |
| BXD03 | -1.933 | -5.701 |
| BXD04 | -0.334 | -5.449 |
| BXD05 | -0.617 | -5.458 |
| BXD06 | -0.84 | -5.628 |
| BXD07 | -0.161 | -6.0 |
| BXD08 | -0.181 | -5.729 |
| BXD09 | -0.828 | -6.0 |
| CAST | -0.374 | -5.027 |
| CCcont | -0.442 | -3.151 |
| DS01 | 0.118 | -4.423 |
| DS02 | 0.25 | -2.169 |
| DS04 | -0.252 | -3.031 |
| DS0c | -0.531 | -3.204 |
| GP01 | -1.249 | -3.866 |
| GP02 | 0.066 | -3.314 |
| GP0c | -0.404 | -3.317 |
| NOD | -1.131 | -3.479 |
| NZO | 0.513 | -6.0 |
| PWK | -0.53 | -5.005 |
| H37Rv_KO_CtpC | -0.601 | -3.409 |
| H37Rv_KO_CtpD | 0.277 | -1.425 |
| H37Rv_KO_Rv1272 | -1.346 | -4.864 |
| H37Rv_KO_SugABC | -1.121 | -3.756 |
| H37Rv_KO_MbtN | -1.854 | -3.599 |
| Trans05 | -1.534 | -4.881 |
| macrophage_unactivated | -0.546 | -6.0 |
| IL1 | -0.258 | -4.942 |
| Rapamycin | 0.417 | -5.518 |
| Tcell | -0.375 | -6.0 |
| GMCSF | 0.433 | -6.0 |
| IFNab | -0.819 | -6.0 |
| IFNg | -0.203 | -6.0 |
| IFNg_GMCSF1 | -0.116 | -6.0 |
| Rv1432_day32 | 0.505 | 0.18 |
| Rv1565c_day32 | -0.082 | 2.088 |
| secA2_input | -0.158 | -1.115 |
| delta_Rv3594 | -0.086 | -5.632 |
| delta_Rv3717 | 0.049 | -3.301 |
| delta_Rv3811 | -0.37 | -5.661 |
| delta_Rv0954 | 0.248 | -0.881 |
| PonA1 | 0.623 | 1.487 |
| EccD1_KO | 0.092 | -1.973 |
| EspI_KO | 1.326 | -1.84 |
| PE35_KO | 0.414 | -0.058 |
| PPE68_KO | -0.307 | -0.976 |
| glycerol2 | 0.416 | -0.68 |
| lignocerate | 0.379 | 0.0 |
| oleate | 0.914 | 2.006 |
| phosphatidylcholine | 0.475 | 6.0 |
| acetate | -0.07 | -1.342 |
| glucAc | -0.379 | -0.964 |
| Rv0950ko | 0.63 | -0.296 |
| Rv1096ko | 1.068 | -0.296 |
| Rv3684ko | 1.136 | 0.301 |
| delta_otsA_trehalose | -0.578 | -1.214 |