Top 10 genes with highest correlation to Rv1111c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3818/- | (cc=0.7343) | info on Rv3818/- |
| Rv3854c/ethA | (cc=0.69) | info on Rv3854c/ethA |
| Rv3267/- | (cc=0.6193) | info on Rv3267/- |
| Rv0497/- | (cc=0.6082) | info on Rv0497/- |
| Rv0050/ponA1 | (cc=0.605) | info on Rv0050/ponA1 |
| Rv1747/- | (cc=0.603) | info on Rv1747/- |
| Rv0309/- | (cc=0.5864) | info on Rv0309/- |
| Rv3794/embA | (cc=0.5803) | info on Rv3794/embA |
| Rv2190c/- | (cc=0.5646) | info on Rv2190c/- |
| Rv0397A/- | (cc=0.5632) | info on Rv0397A/- |
Correlation of Rv1111c/- with Rv3267/-
Normalized LFCs for Rv1111c/-:
(description and provenance of datasets)
| Rv1111c/- | Rv3267/- | |
| Fe_supp_jason_reseq | 1.264 | 3.866 |
| low_pH_jason_reseq | -0.413 | 0.0 |
| NO_jason_reseq | 1.945 | 0.788 |
| B6_jason_reseq | -0.818 | 0.119 |
| MHCII_jason_reseq | -0.503 | 0.458 |
| Isoniazid02 | -0.885 | 0.744 |
| Rifampicin4 | -2.32 | -5.041 |
| Ethambutol3 | 0.069 | -1.401 |
| Meropenem3 | 0.183 | -1.942 |
| Vancomycin16 | -3.507 | -5.306 |
| Rv2680_day32 | -1.668 | -0.642 |
| H37Rv_KO_MarP | -2.198 | -2.122 |
| hypoxia_3wks | 0.439 | 0.279 |
| hypoxia_6wks | 1.685 | -0.58 |
| glycerol | -1.398 | -0.992 |
| cholesterol | 0.952 | 0.482 |
| AJ | -0.457 | -0.698 |
| Bibs02 | 0.694 | -0.55 |
| Bibs02c | 0.317 | -1.028 |
| BL6 | 1.483 | 2.677 |
| BL6a | 0.587 | -0.277 |
| BXD01 | 0.552 | 0.0 |
| BXD010 | 2.133 | 0.543 |
| BXD011 | 0.913 | 0.08 |
| BXD03 | 0.934 | 0.243 |
| BXD04 | 1.083 | 0.855 |
| BXD05 | 2.061 | 0.836 |
| BXD06 | 1.355 | -0.187 |
| BXD07 | 1.154 | 0.393 |
| BXD08 | 0.549 | 0.31 |
| BXD09 | 0.848 | 0.089 |
| CAST | -0.903 | -0.501 |
| CCcont | 0.802 | 2.965 |
| DS01 | 0.075 | -0.926 |
| DS02 | 0.035 | -0.852 |
| DS04 | 1.003 | 0.239 |
| DS0c | 0.478 | -0.652 |
| GP01 | 0.83 | -0.387 |
| GP02 | 0.0 | -0.326 |
| GP0c | 1.352 | 1.465 |
| NOD | -1.778 | -1.103 |
| NZO | 0.126 | -0.98 |
| PWK | 1.373 | -0.963 |
| H37Rv_KO_CtpC | 0.872 | -0.109 |
| H37Rv_KO_CtpD | -0.437 | 0.787 |
| H37Rv_KO_Rv1272 | 0.469 | 0.658 |
| H37Rv_KO_SugABC | 1.22 | -0.138 |
| H37Rv_KO_MbtN | 2.108 | 0.391 |
| Trans05 | 1.251 | 0.554 |
| macrophage_unactivated | 0.988 | 0.0 |
| IL1 | 0.131 | -1.231 |
| Rapamycin | 0.491 | 0.181 |
| Tcell | 0.456 | -1.906 |
| GMCSF | 1.299 | 0.0 |
| IFNab | 1.859 | 2.543 |
| IFNg | 0.663 | -1.109 |
| IFNg_GMCSF1 | -0.145 | -1.059 |
| Rv1432_day32 | 0.082 | -0.198 |
| Rv1565c_day32 | 0.619 | 0.0 |
| secA2_input | 0.199 | 1.533 |
| delta_Rv3594 | 1.103 | -0.205 |
| delta_Rv3717 | 1.38 | -0.301 |
| delta_Rv3811 | 1.06 | -1.164 |
| delta_Rv0954 | -1.398 | -5.272 |
| PonA1 | -1.316 | -2.333 |
| EccD1_KO | -0.697 | -3.134 |
| EspI_KO | -0.231 | -3.037 |
| PE35_KO | -0.753 | -2.826 |
| PPE68_KO | -0.442 | -1.661 |
| glycerol2 | -0.398 | -0.193 |
| lignocerate | -0.681 | -0.168 |
| oleate | -0.403 | -0.196 |
| phosphatidylcholine | -1.008 | -0.193 |
| acetate | -0.086 | -0.229 |
| glucAc | -0.578 | -0.143 |
| Rv0950ko | -0.142 | -0.841 |
| Rv1096ko | 0.651 | 1.309 |
| Rv3684ko | -0.206 | 1.13 |
| delta_otsA_trehalose | -0.474 | 0.457 |