Top 10 genes with highest correlation to Rv1088/PE9:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1918c/PPE35 | (cc=0.6152) | info on Rv1918c/PPE35 |
| Rv2548/vapC19 | (cc=0.5699) | info on Rv2548/vapC19 |
| Rv2717c/- | (cc=0.5658) | info on Rv2717c/- |
| Rv1059/- | (cc=0.5656) | info on Rv1059/- |
| Rv0799c/- | (cc=0.5429) | info on Rv0799c/- |
| Rv1521/fadD25 | (cc=0.5388) | info on Rv1521/fadD25 |
| Rv0260c/- | (cc=0.5319) | info on Rv0260c/- |
| Rv1502/- | (cc=0.5291) | info on Rv1502/- |
| Rv2835c/ugpA | (cc=0.5128) | info on Rv2835c/ugpA |
| Rv2809/- | (cc=0.5059) | info on Rv2809/- |
Correlation of Rv1088/PE9 with Rv0799c/-
Normalized LFCs for Rv1088/PE9:
(description and provenance of datasets)
| Rv1088/PE9 | Rv0799c/- | |
| Fe_supp_jason_reseq | 1.621 | -0.33 |
| low_pH_jason_reseq | -2.414 | -0.507 |
| NO_jason_reseq | -0.108 | 0.0 |
| B6_jason_reseq | -0.142 | -1.089 |
| MHCII_jason_reseq | -1.374 | 0.527 |
| Isoniazid02 | 0.534 | -0.224 |
| Rifampicin4 | 1.037 | 0.861 |
| Ethambutol3 | 0.505 | 0.303 |
| Meropenem3 | 1.364 | 0.0 |
| Vancomycin16 | 0.268 | 0.565 |
| Rv2680_day32 | -3.328 | -2.674 |
| H37Rv_KO_MarP | -0.277 | -0.203 |
| hypoxia_3wks | 0.299 | 0.387 |
| hypoxia_6wks | 0.021 | 0.052 |
| glycerol | -2.147 | -1.021 |
| cholesterol | -0.961 | -0.13 |
| AJ | -0.827 | -0.319 |
| Bibs02 | 0.842 | 0.4 |
| Bibs02c | -0.981 | -0.188 |
| BL6 | 0.674 | 1.128 |
| BL6a | 1.459 | 1.611 |
| BXD01 | 1.37 | 1.365 |
| BXD010 | 1.021 | 1.193 |
| BXD011 | 1.285 | 0.985 |
| BXD03 | 1.652 | 1.67 |
| BXD04 | 0.061 | 0.256 |
| BXD05 | 1.745 | 1.533 |
| BXD06 | 1.016 | 1.014 |
| BXD07 | 0.866 | 0.858 |
| BXD08 | 1.823 | 1.038 |
| BXD09 | 1.547 | 1.171 |
| CAST | -0.445 | -0.596 |
| CCcont | 0.882 | 1.254 |
| DS01 | -1.567 | 0.287 |
| DS02 | 0.21 | -0.263 |
| DS04 | -0.316 | 0.698 |
| DS0c | -1.439 | 0.574 |
| GP01 | -1.37 | 0.169 |
| GP02 | -0.065 | -0.347 |
| GP0c | 0.253 | -0.313 |
| NOD | -1.189 | 0.358 |
| NZO | 0.87 | -0.275 |
| PWK | -1.445 | 0.54 |
| H37Rv_KO_CtpC | 0.971 | 0.134 |
| H37Rv_KO_CtpD | 0.683 | 1.38 |
| H37Rv_KO_Rv1272 | 1.354 | -0.781 |
| H37Rv_KO_SugABC | 0.606 | -1.449 |
| H37Rv_KO_MbtN | -0.659 | 1.286 |
| Trans05 | 2.476 | 1.122 |
| macrophage_unactivated | 0.707 | 0.057 |
| IL1 | 0.406 | 0.371 |
| Rapamycin | 0.663 | 0.687 |
| Tcell | 1.896 | 0.352 |
| GMCSF | 0.446 | -0.201 |
| IFNab | 0.106 | 0.193 |
| IFNg | 0.759 | 0.147 |
| IFNg_GMCSF1 | -0.569 | 0.028 |
| Rv1432_day32 | 0.265 | -0.18 |
| Rv1565c_day32 | 0.414 | -0.559 |
| secA2_input | -1.772 | -0.416 |
| delta_Rv3594 | -0.278 | -0.941 |
| delta_Rv3717 | 0.54 | -0.369 |
| delta_Rv3811 | 0.776 | -0.574 |
| delta_Rv0954 | -0.631 | -0.159 |
| PonA1 | -0.248 | 0.099 |
| EccD1_KO | -0.707 | 0.049 |
| EspI_KO | 0.0 | 1.392 |
| PE35_KO | -1.683 | 0.254 |
| PPE68_KO | -1.11 | 0.186 |
| glycerol2 | 0.266 | -0.011 |
| lignocerate | 0.911 | -0.248 |
| oleate | -0.588 | -0.169 |
| phosphatidylcholine | 0.585 | 0.387 |
| acetate | 0.198 | -0.052 |
| glucAc | 0.484 | -0.648 |
| Rv0950ko | -0.992 | -1.239 |
| Rv1096ko | -3.016 | -1.071 |
| Rv3684ko | -2.738 | -1.791 |
| delta_otsA_trehalose | 0.539 | 1.152 |