Top 10 genes with highest correlation to Rv1082/mca:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv3165c/- | (cc=0.4085) | info on Rv3165c/- |
| Rv1083/- | (cc=0.4038) | info on Rv1083/- |
| Rv2427c/proA | (cc=0.3975) | info on Rv2427c/proA |
| Rv1404/- | (cc=0.3864) | info on Rv1404/- |
| Rv3855/ethR | (cc=0.3736) | info on Rv3855/ethR |
| Rv2335/cysE | (cc=0.3678) | info on Rv2335/cysE |
| Rv0499/- | (cc=0.3634) | info on Rv0499/- |
| Rv0626/vapB5 | (cc=0.3574) | info on Rv0626/vapB5 |
| Rv3214/gpm2 | (cc=0.3495) | info on Rv3214/gpm2 |
| Rv3438/- | (cc=0.3384) | info on Rv3438/- |
Correlation of Rv1082/mca with Rv3214/gpm2
Normalized LFCs for Rv1082/mca:
(description and provenance of datasets)
| Rv1082/mca | Rv3214/gpm2 | |
| Fe_supp_jason_reseq | 1.88 | 0.867 |
| low_pH_jason_reseq | 1.504 | 0.979 |
| NO_jason_reseq | -1.638 | -1.137 |
| B6_jason_reseq | 0.914 | 0.483 |
| MHCII_jason_reseq | 0.26 | -0.612 |
| Isoniazid02 | -0.976 | -1.104 |
| Rifampicin4 | 0.179 | -0.374 |
| Ethambutol3 | 0.632 | 4.243 |
| Meropenem3 | -0.229 | -0.04 |
| Vancomycin16 | -0.44 | -0.088 |
| Rv2680_day32 | -0.148 | 0.82 |
| H37Rv_KO_MarP | 1.043 | 0.246 |
| hypoxia_3wks | -0.55 | -1.878 |
| hypoxia_6wks | 0.601 | -0.311 |
| glycerol | 0.298 | -1.005 |
| cholesterol | -0.435 | 0.435 |
| AJ | 0.277 | -0.151 |
| Bibs02 | -1.476 | -2.015 |
| Bibs02c | -1.206 | -0.608 |
| BL6 | 0.661 | 0.42 |
| BL6a | 0.0 | 0.776 |
| BXD01 | -0.085 | 2.616 |
| BXD010 | 0.596 | 1.134 |
| BXD011 | 0.069 | 1.778 |
| BXD03 | 0.69 | 1.295 |
| BXD04 | 0.851 | 2.487 |
| BXD05 | 0.073 | 1.997 |
| BXD06 | -0.205 | 2.521 |
| BXD07 | 0.48 | 1.939 |
| BXD08 | -0.204 | 2.866 |
| BXD09 | 0.328 | 1.944 |
| CAST | 0.259 | 0.976 |
| CCcont | 0.601 | 0.754 |
| DS01 | -1.145 | -0.838 |
| DS02 | 0.035 | -1.442 |
| DS04 | -0.464 | -1.739 |
| DS0c | -0.124 | -0.456 |
| GP01 | 0.513 | -0.207 |
| GP02 | -0.295 | -0.686 |
| GP0c | -0.211 | 0.742 |
| NOD | 0.088 | 0.07 |
| NZO | 0.978 | 1.121 |
| PWK | 0.567 | -0.652 |
| H37Rv_KO_CtpC | -0.405 | -1.077 |
| H37Rv_KO_CtpD | -0.278 | -0.04 |
| H37Rv_KO_Rv1272 | 0.139 | 0.953 |
| H37Rv_KO_SugABC | 1.05 | 0.399 |
| H37Rv_KO_MbtN | 0.73 | -0.196 |
| Trans05 | 0.137 | 1.705 |
| macrophage_unactivated | -0.098 | -0.281 |
| IL1 | 0.673 | -1.299 |
| Rapamycin | -0.77 | -1.418 |
| Tcell | -0.365 | 0.772 |
| GMCSF | -0.166 | -1.347 |
| IFNab | -0.438 | -1.185 |
| IFNg | 0.04 | 0.307 |
| IFNg_GMCSF1 | 0.952 | -1.376 |
| Rv1432_day32 | 0.348 | 0.0 |
| Rv1565c_day32 | 0.251 | 0.044 |
| secA2_input | 0.161 | -3.572 |
| delta_Rv3594 | 0.202 | 0.746 |
| delta_Rv3717 | 0.0 | 1.616 |
| delta_Rv3811 | -0.308 | 1.666 |
| delta_Rv0954 | -0.698 | -1.213 |
| PonA1 | 0.361 | -0.386 |
| EccD1_KO | 0.382 | -1.845 |
| EspI_KO | 0.0 | -1.403 |
| PE35_KO | 0.117 | -2.824 |
| PPE68_KO | -0.099 | -1.872 |
| glycerol2 | 0.0 | -1.033 |
| lignocerate | 0.128 | -1.038 |
| oleate | -2.325 | -1.65 |
| phosphatidylcholine | -1.02 | -1.63 |
| acetate | 1.794 | 1.368 |
| glucAc | 1.156 | 0.864 |
| Rv0950ko | 0.455 | -0.332 |
| Rv1096ko | -0.115 | 0.651 |
| Rv3684ko | -0.157 | 1.916 |
| delta_otsA_trehalose | -1.089 | 0.466 |