Top 10 genes with highest correlation to Rv1078/pra:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2131c/cysQ | (cc=0.7118) | info on Rv2131c/cysQ |
| Rv2256c/- | (cc=0.706) | info on Rv2256c/- |
| Rv1080c/greA | (cc=0.7002) | info on Rv1080c/greA |
| Rv2524c/fas | (cc=0.6803) | info on Rv2524c/fas |
| Rv2785c/rpsO | (cc=0.6637) | info on Rv2785c/rpsO |
| Rv0238/- | (cc=0.6601) | info on Rv0238/- |
| Rv3410c/guaB3 | (cc=0.6547) | info on Rv3410c/guaB3 |
| Rv1340/rphA | (cc=0.6508) | info on Rv1340/rphA |
| Rv0211/pckA | (cc=0.6307) | info on Rv0211/pckA |
| Rv3764c/tcrY | (cc=0.6089) | info on Rv3764c/tcrY |
Correlation of Rv1078/pra with Rv2131c/cysQ
Normalized LFCs for Rv1078/pra:
(description and provenance of datasets)
| Rv1078/pra | Rv2131c/cysQ | |
| Fe_supp_jason_reseq | 0.766 | -1.579 |
| low_pH_jason_reseq | 0.0 | 2.441 |
| NO_jason_reseq | 0.0 | -2.042 |
| B6_jason_reseq | 0.0 | -1.402 |
| MHCII_jason_reseq | 0.0 | -0.977 |
| Isoniazid02 | 0.563 | 4.744 |
| Rifampicin4 | 0.073 | 0.29 |
| Ethambutol3 | 3.374 | 0.777 |
| Meropenem3 | 0.189 | -0.497 |
| Vancomycin16 | 0.143 | -1.303 |
| Rv2680_day32 | 0.0 | 0.0 |
| H37Rv_KO_MarP | -0.43 | 1.3 |
| hypoxia_3wks | -0.706 | 1.184 |
| hypoxia_6wks | -1.865 | 2.414 |
| glycerol | 0.0 | 0.0 |
| cholesterol | 0.276 | 0.0 |
| AJ | 0.0 | 0.0 |
| Bibs02 | 0.0 | 0.0 |
| Bibs02c | 0.0 | 0.0 |
| BL6 | 0.238 | 2.634 |
| BL6a | 0.544 | 2.709 |
| BXD01 | 0.13 | 3.093 |
| BXD010 | 0.128 | 2.525 |
| BXD011 | 0.0 | 2.032 |
| BXD03 | 0.135 | 0.75 |
| BXD04 | 0.0 | 1.582 |
| BXD05 | 0.256 | 2.051 |
| BXD06 | 0.366 | 2.793 |
| BXD07 | 0.264 | 3.258 |
| BXD08 | 0.0 | 1.781 |
| BXD09 | 0.69 | 3.789 |
| CAST | 0.0 | 0.0 |
| CCcont | 2.847 | 4.141 |
| DS01 | 0.0 | 0.0 |
| DS02 | 0.0 | 0.0 |
| DS04 | 1.192 | 2.358 |
| DS0c | 0.0 | 0.0 |
| GP01 | 0.0 | 0.0 |
| GP02 | 0.0 | 0.159 |
| GP0c | 0.0 | 0.0 |
| NOD | 0.0 | 0.0 |
| NZO | 0.0 | 0.0 |
| PWK | 0.0 | 0.0 |
| H37Rv_KO_CtpC | 0.446 | 0.901 |
| H37Rv_KO_CtpD | 0.348 | 0.241 |
| H37Rv_KO_Rv1272 | 0.141 | 1.714 |
| H37Rv_KO_SugABC | 1.534 | 2.572 |
| H37Rv_KO_MbtN | 1.52 | 1.712 |
| Trans05 | 0.0 | 1.251 |
| macrophage_unactivated | 1.196 | -1.146 |
| IL1 | 0.0 | -2.515 |
| Rapamycin | 0.0 | -1.439 |
| Tcell | 0.45 | -3.812 |
| GMCSF | 0.0 | -1.545 |
| IFNab | 0.0 | 2.576 |
| IFNg | 0.0 | -2.673 |
| IFNg_GMCSF1 | 0.0 | -1.838 |
| Rv1432_day32 | 0.0 | 0.0 |
| Rv1565c_day32 | 0.0 | 0.0 |
| secA2_input | 1.442 | 0.523 |
| delta_Rv3594 | 2.177 | 4.569 |
| delta_Rv3717 | 1.453 | 3.925 |
| delta_Rv3811 | 2.223 | 4.714 |
| delta_Rv0954 | -1.667 | -0.69 |
| PonA1 | -1.399 | -1.32 |
| EccD1_KO | -2.687 | -5.903 |
| EspI_KO | -3.2 | -6.0 |
| PE35_KO | -1.651 | -3.063 |
| PPE68_KO | -1.629 | -4.348 |
| glycerol2 | 0.649 | -0.744 |
| lignocerate | -1.266 | -1.218 |
| oleate | -0.802 | -1.955 |
| phosphatidylcholine | -1.964 | -1.931 |
| acetate | -0.133 | 0.422 |
| glucAc | -0.264 | -0.249 |
| Rv0950ko | -3.395 | -5.992 |
| Rv1096ko | -4.515 | -6.0 |
| Rv3684ko | -3.688 | -6.0 |
| delta_otsA_trehalose | 0.409 | -1.39 |