Top 10 genes with highest correlation to Rv1062/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2607/pdxH | (cc=0.541) | info on Rv2607/pdxH |
| Rv3819/- | (cc=0.5225) | info on Rv3819/- |
| Rv0042c/- | (cc=0.5185) | info on Rv0042c/- |
| Rv1160/mutT2 | (cc=0.5161) | info on Rv1160/mutT2 |
| Rv3112/moaD1 | (cc=0.5022) | info on Rv3112/moaD1 |
| Rv3208A/TB9.4 | (cc=0.5021) | info on Rv3208A/TB9.4 |
| Rv0319/pcp | (cc=0.4983) | info on Rv0319/pcp |
| Rv3618/- | (cc=0.4966) | info on Rv3618/- |
| Rv1907c/- | (cc=0.4865) | info on Rv1907c/- |
| Rv3353c/- | (cc=0.4796) | info on Rv3353c/- |
Correlation of Rv1062/- with Rv3208A/TB9.4
Normalized LFCs for Rv1062/-:
(description and provenance of datasets)
| Rv1062/- | Rv3208A/TB9.4 | |
| Fe_supp_jason_reseq | -1.489 | 2.398 |
| low_pH_jason_reseq | -0.549 | 0.694 |
| NO_jason_reseq | -1.355 | -0.263 |
| B6_jason_reseq | 0.802 | 1.57 |
| MHCII_jason_reseq | -0.755 | 0.929 |
| Isoniazid02 | 0.029 | -0.518 |
| Rifampicin4 | -1.424 | 0.826 |
| Ethambutol3 | -0.604 | 2.476 |
| Meropenem3 | -0.812 | 0.126 |
| Vancomycin16 | -0.573 | 0.783 |
| Rv2680_day32 | -1.763 | 0.442 |
| H37Rv_KO_MarP | -0.045 | 1.016 |
| hypoxia_3wks | -1.308 | -1.882 |
| hypoxia_6wks | -1.04 | -1.633 |
| glycerol | -0.429 | 0.549 |
| cholesterol | -0.448 | 0.952 |
| AJ | -0.099 | -1.264 |
| Bibs02 | -2.084 | -0.898 |
| Bibs02c | 0.086 | 0.887 |
| BL6 | 1.677 | -0.948 |
| BL6a | 0.649 | 1.267 |
| BXD01 | 0.577 | -0.479 |
| BXD010 | -0.353 | -1.775 |
| BXD011 | -0.85 | -0.226 |
| BXD03 | 0.753 | -1.273 |
| BXD04 | 0.62 | -1.268 |
| BXD05 | -0.542 | -1.38 |
| BXD06 | -0.012 | -0.967 |
| BXD07 | -0.012 | -1.096 |
| BXD08 | 0.507 | -1.688 |
| BXD09 | -0.023 | -1.267 |
| CAST | -0.33 | -1.255 |
| CCcont | 0.889 | 1.69 |
| DS01 | -0.315 | -0.71 |
| DS02 | -0.189 | -0.607 |
| DS04 | -0.066 | -0.76 |
| DS0c | 0.913 | 0.267 |
| GP01 | -0.628 | 0.559 |
| GP02 | -0.908 | -0.603 |
| GP0c | -1.418 | 0.796 |
| NOD | 2.055 | 0.877 |
| NZO | 0.553 | 0.217 |
| PWK | 1.063 | -0.816 |
| H37Rv_KO_CtpC | -0.055 | 0.421 |
| H37Rv_KO_CtpD | -1.295 | 0.509 |
| H37Rv_KO_Rv1272 | -0.897 | 1.508 |
| H37Rv_KO_SugABC | 0.476 | 1.283 |
| H37Rv_KO_MbtN | -1.468 | -1.428 |
| Trans05 | -0.056 | 1.464 |
| macrophage_unactivated | -1.228 | -0.316 |
| IL1 | -1.003 | -2.029 |
| Rapamycin | -0.939 | -0.988 |
| Tcell | 0.329 | -0.215 |
| GMCSF | -2.854 | -0.544 |
| IFNab | -1.388 | -0.2 |
| IFNg | -1.529 | -1.438 |
| IFNg_GMCSF1 | -0.478 | -2.85 |
| Rv1432_day32 | 0.993 | -0.314 |
| Rv1565c_day32 | 0.125 | 2.132 |
| secA2_input | -0.471 | -2.134 |
| delta_Rv3594 | 2.447 | 3.706 |
| delta_Rv3717 | 1.579 | 2.44 |
| delta_Rv3811 | 2.596 | 2.235 |
| delta_Rv0954 | 1.768 | 2.571 |
| PonA1 | 0.861 | 0.794 |
| EccD1_KO | -1.717 | 0.52 |
| EspI_KO | -0.237 | 0.821 |
| PE35_KO | -0.554 | 1.12 |
| PPE68_KO | 0.0 | 2.259 |
| glycerol2 | 0.803 | 3.174 |
| lignocerate | 1.766 | 2.649 |
| oleate | -2.887 | -2.12 |
| phosphatidylcholine | 1.543 | 2.465 |
| acetate | 1.859 | 4.178 |
| glucAc | 2.155 | 3.653 |
| Rv0950ko | -1.122 | -1.167 |
| Rv1096ko | -1.122 | -0.585 |
| Rv3684ko | 0.567 | 0.802 |
| delta_otsA_trehalose | 1.44 | 0.955 |