Top 10 genes with highest correlation to Rv1062/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2607/pdxH | (cc=0.541) | info on Rv2607/pdxH |
| Rv3819/- | (cc=0.5225) | info on Rv3819/- |
| Rv0042c/- | (cc=0.5185) | info on Rv0042c/- |
| Rv1160/mutT2 | (cc=0.5161) | info on Rv1160/mutT2 |
| Rv3112/moaD1 | (cc=0.5022) | info on Rv3112/moaD1 |
| Rv3208A/TB9.4 | (cc=0.5021) | info on Rv3208A/TB9.4 |
| Rv0319/pcp | (cc=0.4983) | info on Rv0319/pcp |
| Rv3618/- | (cc=0.4966) | info on Rv3618/- |
| Rv1907c/- | (cc=0.4865) | info on Rv1907c/- |
| Rv3353c/- | (cc=0.4796) | info on Rv3353c/- |
Correlation of Rv1062/- with Rv2607/pdxH
Normalized LFCs for Rv1062/-:
(description and provenance of datasets)
| Rv1062/- | Rv2607/pdxH | |
| Fe_supp_jason_reseq | -1.489 | 0.096 |
| low_pH_jason_reseq | -0.549 | -0.31 |
| NO_jason_reseq | -1.355 | -1.664 |
| B6_jason_reseq | 0.802 | -0.401 |
| MHCII_jason_reseq | -0.755 | 0.581 |
| Isoniazid02 | 0.029 | -1.104 |
| Rifampicin4 | -1.424 | 0.85 |
| Ethambutol3 | -0.604 | -0.803 |
| Meropenem3 | -0.812 | -0.355 |
| Vancomycin16 | -0.573 | -0.515 |
| Rv2680_day32 | -1.763 | -0.08 |
| H37Rv_KO_MarP | -0.045 | -0.172 |
| hypoxia_3wks | -1.308 | -0.674 |
| hypoxia_6wks | -1.04 | -0.447 |
| glycerol | -0.429 | 0.513 |
| cholesterol | -0.448 | 0.199 |
| AJ | -0.099 | 0.027 |
| Bibs02 | -2.084 | -0.585 |
| Bibs02c | 0.086 | -0.247 |
| BL6 | 1.677 | 0.401 |
| BL6a | 0.649 | -0.468 |
| BXD01 | 0.577 | -0.439 |
| BXD010 | -0.353 | 0.284 |
| BXD011 | -0.85 | -0.117 |
| BXD03 | 0.753 | 0.374 |
| BXD04 | 0.62 | -0.238 |
| BXD05 | -0.542 | 0.776 |
| BXD06 | -0.012 | 0.0 |
| BXD07 | -0.012 | -0.277 |
| BXD08 | 0.507 | -0.032 |
| BXD09 | -0.023 | -0.184 |
| CAST | -0.33 | 0.432 |
| CCcont | 0.889 | 0.512 |
| DS01 | -0.315 | 0.226 |
| DS02 | -0.189 | 0.05 |
| DS04 | -0.066 | -0.191 |
| DS0c | 0.913 | 0.449 |
| GP01 | -0.628 | 0.478 |
| GP02 | -0.908 | -0.287 |
| GP0c | -1.418 | -0.055 |
| NOD | 2.055 | 1.442 |
| NZO | 0.553 | 0.147 |
| PWK | 1.063 | 0.057 |
| H37Rv_KO_CtpC | -0.055 | -0.235 |
| H37Rv_KO_CtpD | -1.295 | 0.305 |
| H37Rv_KO_Rv1272 | -0.897 | -0.016 |
| H37Rv_KO_SugABC | 0.476 | 0.927 |
| H37Rv_KO_MbtN | -1.468 | -0.33 |
| Trans05 | -0.056 | 0.491 |
| macrophage_unactivated | -1.228 | 0.0 |
| IL1 | -1.003 | -0.596 |
| Rapamycin | -0.939 | -0.715 |
| Tcell | 0.329 | -1.323 |
| GMCSF | -2.854 | -0.837 |
| IFNab | -1.388 | -0.127 |
| IFNg | -1.529 | -0.756 |
| IFNg_GMCSF1 | -0.478 | -0.968 |
| Rv1432_day32 | 0.993 | 0.608 |
| Rv1565c_day32 | 0.125 | -0.131 |
| secA2_input | -0.471 | -0.294 |
| delta_Rv3594 | 2.447 | 1.64 |
| delta_Rv3717 | 1.579 | 1.367 |
| delta_Rv3811 | 2.596 | 1.48 |
| delta_Rv0954 | 1.768 | -0.039 |
| PonA1 | 0.861 | -1.272 |
| EccD1_KO | -1.717 | 0.194 |
| EspI_KO | -0.237 | -0.057 |
| PE35_KO | -0.554 | 0.796 |
| PPE68_KO | 0.0 | 0.23 |
| glycerol2 | 0.803 | 0.799 |
| lignocerate | 1.766 | 1.642 |
| oleate | -2.887 | -0.54 |
| phosphatidylcholine | 1.543 | 1.912 |
| acetate | 1.859 | 1.338 |
| glucAc | 2.155 | 1.263 |
| Rv0950ko | -1.122 | -0.431 |
| Rv1096ko | -1.122 | -0.709 |
| Rv3684ko | 0.567 | -0.675 |
| delta_otsA_trehalose | 1.44 | -0.459 |