Top 10 genes with highest correlation to Rv1013/pks16:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1366/- | (cc=0.5409) | info on Rv1366/- |
| Rv0072/- | (cc=0.5362) | info on Rv0072/- |
| Rv0643c/mmaA3 | (cc=0.5343) | info on Rv0643c/mmaA3 |
| Rv2777c/- | (cc=0.5297) | info on Rv2777c/- |
| Rv3823c/mmpL8 | (cc=0.5196) | info on Rv3823c/mmpL8 |
| Rv0235c/- | (cc=0.5066) | info on Rv0235c/- |
| Rv3555c/- | (cc=0.494) | info on Rv3555c/- |
| Rv2444c/rne | (cc=0.4901) | info on Rv2444c/rne |
| Rv3148/nuoD | (cc=0.4812) | info on Rv3148/nuoD |
| Rv3421c/- | (cc=0.4794) | info on Rv3421c/- |
Correlation of Rv1013/pks16 with Rv3555c/-
Normalized LFCs for Rv1013/pks16:
(description and provenance of datasets)
| Rv1013/pks16 | Rv3555c/- | |
| Fe_supp_jason_reseq | 0.48 | -1.642 |
| low_pH_jason_reseq | -0.495 | -0.427 |
| NO_jason_reseq | 1.533 | -0.158 |
| B6_jason_reseq | -1.271 | -3.052 |
| MHCII_jason_reseq | -3.023 | -0.977 |
| Isoniazid02 | -1.756 | -0.247 |
| Rifampicin4 | 0.019 | -0.523 |
| Ethambutol3 | 2.037 | -0.153 |
| Meropenem3 | 1.0 | 0.024 |
| Vancomycin16 | -0.236 | 0.0 |
| Rv2680_day32 | -0.362 | -0.916 |
| H37Rv_KO_MarP | 0.968 | 0.103 |
| hypoxia_3wks | -3.334 | -0.267 |
| hypoxia_6wks | -3.909 | -1.361 |
| glycerol | -0.856 | -0.554 |
| cholesterol | -1.194 | 0.864 |
| AJ | 0.435 | -0.297 |
| Bibs02 | -0.029 | -0.408 |
| Bibs02c | -1.15 | -1.881 |
| BL6 | 1.133 | 0.627 |
| BL6a | 0.319 | 0.785 |
| BXD01 | 0.994 | 1.705 |
| BXD010 | 2.464 | 0.278 |
| BXD011 | 1.442 | 0.87 |
| BXD03 | 2.47 | 1.032 |
| BXD04 | 1.886 | 2.404 |
| BXD05 | 1.862 | -0.056 |
| BXD06 | 1.863 | 1.189 |
| BXD07 | 1.419 | 1.662 |
| BXD08 | 1.095 | 1.208 |
| BXD09 | 2.209 | 1.228 |
| CAST | 0.0 | -1.49 |
| CCcont | 2.434 | 0.0 |
| DS01 | -0.636 | -0.197 |
| DS02 | -0.106 | -0.38 |
| DS04 | 0.561 | -0.984 |
| DS0c | 0.919 | -0.596 |
| GP01 | 2.567 | 2.544 |
| GP02 | 2.671 | 2.419 |
| GP0c | 1.142 | 2.452 |
| NOD | -0.185 | -0.392 |
| NZO | -0.342 | -1.011 |
| PWK | 1.903 | 0.61 |
| H37Rv_KO_CtpC | 1.227 | 1.632 |
| H37Rv_KO_CtpD | 0.133 | 1.273 |
| H37Rv_KO_Rv1272 | 0.656 | 0.351 |
| H37Rv_KO_SugABC | -0.099 | 0.865 |
| H37Rv_KO_MbtN | 1.591 | 0.118 |
| Trans05 | 0.998 | 1.333 |
| macrophage_unactivated | -0.552 | -1.13 |
| IL1 | -0.917 | 0.169 |
| Rapamycin | -0.853 | -0.878 |
| Tcell | 0.984 | 0.362 |
| GMCSF | -1.941 | -2.075 |
| IFNab | -2.065 | -1.312 |
| IFNg | -2.539 | -1.601 |
| IFNg_GMCSF1 | -2.212 | -1.882 |
| Rv1432_day32 | 0.463 | 0.0 |
| Rv1565c_day32 | 1.501 | 0.535 |
| secA2_input | -2.481 | -0.186 |
| delta_Rv3594 | -1.239 | -0.626 |
| delta_Rv3717 | 0.375 | -0.693 |
| delta_Rv3811 | -2.174 | -1.054 |
| delta_Rv0954 | 0.823 | -1.452 |
| PonA1 | 0.768 | -2.038 |
| EccD1_KO | -0.191 | -1.536 |
| EspI_KO | 0.128 | -0.279 |
| PE35_KO | -1.068 | -0.995 |
| PPE68_KO | -0.218 | -1.091 |
| glycerol2 | -0.073 | 0.601 |
| lignocerate | 4.396 | -0.505 |
| oleate | 6.0 | 0.425 |
| phosphatidylcholine | 2.531 | 0.482 |
| acetate | 1.438 | -0.883 |
| glucAc | 0.923 | -1.352 |
| Rv0950ko | -0.956 | -0.694 |
| Rv1096ko | -0.323 | 0.781 |
| Rv3684ko | 1.166 | 0.301 |
| delta_otsA_trehalose | -0.506 | 1.858 |