Top 10 genes with highest correlation to Rv1013/pks16:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1366/- | (cc=0.5409) | info on Rv1366/- |
| Rv0072/- | (cc=0.5362) | info on Rv0072/- |
| Rv0643c/mmaA3 | (cc=0.5343) | info on Rv0643c/mmaA3 |
| Rv2777c/- | (cc=0.5297) | info on Rv2777c/- |
| Rv3823c/mmpL8 | (cc=0.5196) | info on Rv3823c/mmpL8 |
| Rv0235c/- | (cc=0.5066) | info on Rv0235c/- |
| Rv3555c/- | (cc=0.494) | info on Rv3555c/- |
| Rv2444c/rne | (cc=0.4901) | info on Rv2444c/rne |
| Rv3148/nuoD | (cc=0.4812) | info on Rv3148/nuoD |
| Rv3421c/- | (cc=0.4794) | info on Rv3421c/- |
Correlation of Rv1013/pks16 with Rv2444c/rne
Normalized LFCs for Rv1013/pks16:
(description and provenance of datasets)
| Rv1013/pks16 | Rv2444c/rne | |
| Fe_supp_jason_reseq | 0.48 | 0.279 |
| low_pH_jason_reseq | -0.495 | 0.872 |
| NO_jason_reseq | 1.533 | 1.25 |
| B6_jason_reseq | -1.271 | -0.795 |
| MHCII_jason_reseq | -3.023 | -1.175 |
| Isoniazid02 | -1.756 | -0.706 |
| Rifampicin4 | 0.019 | -0.29 |
| Ethambutol3 | 2.037 | 1.278 |
| Meropenem3 | 1.0 | -0.128 |
| Vancomycin16 | -0.236 | 0.265 |
| Rv2680_day32 | -0.362 | 0.0 |
| H37Rv_KO_MarP | 0.968 | -0.586 |
| hypoxia_3wks | -3.334 | -1.284 |
| hypoxia_6wks | -3.909 | -0.933 |
| glycerol | -0.856 | 0.157 |
| cholesterol | -1.194 | 0.864 |
| AJ | 0.435 | 1.276 |
| Bibs02 | -0.029 | 0.397 |
| Bibs02c | -1.15 | -0.365 |
| BL6 | 1.133 | 0.0 |
| BL6a | 0.319 | 0.154 |
| BXD01 | 0.994 | 0.365 |
| BXD010 | 2.464 | 0.875 |
| BXD011 | 1.442 | 1.82 |
| BXD03 | 2.47 | 1.317 |
| BXD04 | 1.886 | 0.737 |
| BXD05 | 1.862 | 0.605 |
| BXD06 | 1.863 | 1.533 |
| BXD07 | 1.419 | 0.761 |
| BXD08 | 1.095 | 1.816 |
| BXD09 | 2.209 | 0.557 |
| CAST | 0.0 | -0.402 |
| CCcont | 2.434 | 0.592 |
| DS01 | -0.636 | 0.352 |
| DS02 | -0.106 | 0.169 |
| DS04 | 0.561 | 1.405 |
| DS0c | 0.919 | 0.168 |
| GP01 | 2.567 | -0.082 |
| GP02 | 2.671 | -0.145 |
| GP0c | 1.142 | 0.888 |
| NOD | -0.185 | -0.187 |
| NZO | -0.342 | 0.298 |
| PWK | 1.903 | 2.404 |
| H37Rv_KO_CtpC | 1.227 | 0.731 |
| H37Rv_KO_CtpD | 0.133 | 0.098 |
| H37Rv_KO_Rv1272 | 0.656 | -0.246 |
| H37Rv_KO_SugABC | -0.099 | 1.373 |
| H37Rv_KO_MbtN | 1.591 | 0.9 |
| Trans05 | 0.998 | 0.779 |
| macrophage_unactivated | -0.552 | -0.795 |
| IL1 | -0.917 | -1.406 |
| Rapamycin | -0.853 | -0.988 |
| Tcell | 0.984 | 1.01 |
| GMCSF | -1.941 | -1.468 |
| IFNab | -2.065 | 0.0 |
| IFNg | -2.539 | -0.861 |
| IFNg_GMCSF1 | -2.212 | -1.747 |
| Rv1432_day32 | 0.463 | -1.304 |
| Rv1565c_day32 | 1.501 | 0.0 |
| secA2_input | -2.481 | -0.146 |
| delta_Rv3594 | -1.239 | -1.253 |
| delta_Rv3717 | 0.375 | 1.067 |
| delta_Rv3811 | -2.174 | -0.665 |
| delta_Rv0954 | 0.823 | -1.558 |
| PonA1 | 0.768 | 0.35 |
| EccD1_KO | -0.191 | 0.286 |
| EspI_KO | 0.128 | 0.0 |
| PE35_KO | -1.068 | -0.271 |
| PPE68_KO | -0.218 | -0.298 |
| glycerol2 | -0.073 | -0.193 |
| lignocerate | 4.396 | -0.168 |
| oleate | 6.0 | -0.196 |
| phosphatidylcholine | 2.531 | -0.193 |
| acetate | 1.438 | 0.209 |
| glucAc | 0.923 | 0.249 |
| Rv0950ko | -0.956 | 0.235 |
| Rv1096ko | -0.323 | -0.513 |
| Rv3684ko | 1.166 | -0.557 |
| delta_otsA_trehalose | -0.506 | -0.746 |