Top 10 genes with highest correlation to Rv0999/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv0111/- | (cc=0.6698) | info on Rv0111/- |
| Rv2525c/- | (cc=0.646) | info on Rv2525c/- |
| Rv0436c/pssA | (cc=0.6397) | info on Rv0436c/pssA |
| Rv1006/- | (cc=0.6377) | info on Rv1006/- |
| Rv2363/amiA2 | (cc=0.6363) | info on Rv2363/amiA2 |
| Rv1698/mctB | (cc=0.6243) | info on Rv1698/mctB |
| Rv3810/pirG | (cc=0.6163) | info on Rv3810/pirG |
| Rv0437c/psd | (cc=0.5875) | info on Rv0437c/psd |
| Rv2224c/caeA | (cc=0.5838) | info on Rv2224c/caeA |
| Rv1860/apa | (cc=0.5802) | info on Rv1860/apa |
Correlation of Rv0999/- with Rv1860/apa
Normalized LFCs for Rv0999/-:
(description and provenance of datasets)
| Rv0999/- | Rv1860/apa | |
| Fe_supp_jason_reseq | 1.07 | 3.272 |
| low_pH_jason_reseq | -2.859 | -0.457 |
| NO_jason_reseq | -0.79 | 0.129 |
| B6_jason_reseq | -0.668 | 0.054 |
| MHCII_jason_reseq | -0.177 | -0.101 |
| Isoniazid02 | -1.18 | -1.043 |
| Rifampicin4 | -6.0 | -5.772 |
| Ethambutol3 | -3.222 | 0.061 |
| Meropenem3 | -3.835 | -0.701 |
| Vancomycin16 | -6.0 | -5.858 |
| Rv2680_day32 | -0.811 | 1.123 |
| H37Rv_KO_MarP | -0.865 | -3.981 |
| hypoxia_3wks | 0.056 | -1.958 |
| hypoxia_6wks | -0.307 | -3.197 |
| glycerol | 0.398 | 1.934 |
| cholesterol | 2.859 | 1.239 |
| AJ | -0.871 | -0.541 |
| Bibs02 | 0.925 | 0.898 |
| Bibs02c | -0.083 | 0.838 |
| BL6 | -1.211 | -0.822 |
| BL6a | -1.322 | -0.55 |
| BXD01 | -0.918 | -1.087 |
| BXD010 | -1.239 | -1.021 |
| BXD011 | 1.126 | -0.643 |
| BXD03 | -0.489 | -0.934 |
| BXD04 | -0.673 | -1.131 |
| BXD05 | -0.396 | -0.123 |
| BXD06 | -0.748 | -1.014 |
| BXD07 | -0.58 | -1.156 |
| BXD08 | -0.659 | -0.564 |
| BXD09 | -0.395 | -0.75 |
| CAST | -1.957 | -1.59 |
| CCcont | 0.991 | 1.056 |
| DS01 | -0.546 | 0.801 |
| DS02 | 0.429 | 0.737 |
| DS04 | -0.266 | 1.248 |
| DS0c | -0.396 | -0.652 |
| GP01 | 0.574 | -0.682 |
| GP02 | 1.568 | -1.0 |
| GP0c | 0.445 | -1.085 |
| NOD | -0.975 | -1.01 |
| NZO | -1.608 | 0.626 |
| PWK | -0.602 | -0.544 |
| H37Rv_KO_CtpC | 0.918 | 1.966 |
| H37Rv_KO_CtpD | 1.633 | -0.751 |
| H37Rv_KO_Rv1272 | -0.146 | 0.141 |
| H37Rv_KO_SugABC | 1.311 | 1.422 |
| H37Rv_KO_MbtN | -0.317 | 0.349 |
| Trans05 | -0.733 | 1.414 |
| macrophage_unactivated | 0.458 | 0.609 |
| IL1 | 0.608 | -0.78 |
| Rapamycin | 1.903 | -0.328 |
| Tcell | -1.082 | -0.857 |
| GMCSF | 0.584 | 0.09 |
| IFNab | 1.224 | -0.553 |
| IFNg | 0.051 | -0.286 |
| IFNg_GMCSF1 | 0.845 | -0.22 |
| Rv1432_day32 | -1.785 | 1.0 |
| Rv1565c_day32 | -0.815 | 0.351 |
| secA2_input | -0.437 | 1.19 |
| delta_Rv3594 | 1.088 | 1.386 |
| delta_Rv3717 | 0.487 | 0.839 |
| delta_Rv3811 | 0.77 | 1.423 |
| delta_Rv0954 | 0.674 | 2.022 |
| PonA1 | 0.188 | 0.397 |
| EccD1_KO | -0.789 | 0.918 |
| EspI_KO | 0.1 | 1.189 |
| PE35_KO | 0.137 | 1.021 |
| PPE68_KO | 0.189 | 1.315 |
| glycerol2 | -0.747 | -0.563 |
| lignocerate | -2.208 | -0.521 |
| oleate | -0.855 | -0.173 |
| phosphatidylcholine | -1.288 | -1.097 |
| acetate | -0.497 | 0.648 |
| glucAc | -2.262 | 0.153 |
| Rv0950ko | -1.601 | -1.049 |
| Rv1096ko | -0.989 | -0.98 |
| Rv3684ko | -1.189 | 0.138 |
| delta_otsA_trehalose | -0.862 | -0.86 |