Top 10 genes with highest correlation to Rv0988/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2934/ppsD | (cc=0.5638) | info on Rv2934/ppsD |
| Rv0814c/sseC2 | (cc=0.5628) | info on Rv0814c/sseC2 |
| Rv1582c/- | (cc=0.5334) | info on Rv1582c/- |
| Rv0369c/- | (cc=0.5302) | info on Rv0369c/- |
| Rv2330c/lppP | (cc=0.5233) | info on Rv2330c/lppP |
| Rv2930/fadD26 | (cc=0.5172) | info on Rv2930/fadD26 |
| Rv2939/papA5 | (cc=0.5146) | info on Rv2939/papA5 |
| Rv2935/ppsE | (cc=0.5136) | info on Rv2935/ppsE |
| Rv2932/ppsB | (cc=0.5126) | info on Rv2932/ppsB |
| Rv2933/ppsC | (cc=0.5117) | info on Rv2933/ppsC |
Correlation of Rv0988/- with Rv2934/ppsD
Normalized LFCs for Rv0988/-:
(description and provenance of datasets)
| Rv0988/- | Rv2934/ppsD | |
| Fe_supp_jason_reseq | 0.633 | 1.896 |
| low_pH_jason_reseq | -0.308 | 2.725 |
| NO_jason_reseq | -0.845 | -0.9 |
| B6_jason_reseq | -0.929 | 1.419 |
| MHCII_jason_reseq | -1.035 | -2.763 |
| Isoniazid02 | 0.851 | -0.485 |
| Rifampicin4 | -0.271 | 1.148 |
| Ethambutol3 | 0.966 | 1.229 |
| Meropenem3 | -0.247 | 0.38 |
| Vancomycin16 | -0.13 | 0.348 |
| Rv2680_day32 | -0.323 | -2.04 |
| H37Rv_KO_MarP | -0.127 | -0.586 |
| hypoxia_3wks | -0.327 | 0.538 |
| hypoxia_6wks | -0.355 | -0.461 |
| glycerol | 0.102 | 3.606 |
| cholesterol | 0.073 | 2.613 |
| AJ | -0.393 | 0.763 |
| Bibs02 | -0.098 | -3.155 |
| Bibs02c | -0.488 | -3.186 |
| BL6 | -0.138 | 0.639 |
| BL6a | 0.0 | -0.702 |
| BXD01 | -0.392 | 1.574 |
| BXD010 | -0.217 | 0.38 |
| BXD011 | -0.068 | -0.705 |
| BXD03 | 0.198 | 0.311 |
| BXD04 | 0.124 | 0.313 |
| BXD05 | 0.314 | -1.116 |
| BXD06 | 0.0 | 0.245 |
| BXD07 | 0.264 | 0.077 |
| BXD08 | 0.195 | 1.285 |
| BXD09 | 0.386 | -0.148 |
| CAST | 0.23 | 2.426 |
| CCcont | 0.58 | 1.244 |
| DS01 | 0.0 | 0.65 |
| DS02 | 0.318 | 1.621 |
| DS04 | -0.453 | 0.658 |
| DS0c | 0.993 | 0.151 |
| GP01 | -0.167 | -1.566 |
| GP02 | -0.52 | -1.57 |
| GP0c | -0.585 | -1.829 |
| NOD | 1.175 | 1.886 |
| NZO | 0.199 | 2.446 |
| PWK | 0.287 | 0.109 |
| H37Rv_KO_CtpC | 0.95 | 0.155 |
| H37Rv_KO_CtpD | -0.676 | -0.094 |
| H37Rv_KO_Rv1272 | -0.155 | -0.558 |
| H37Rv_KO_SugABC | 2.325 | 1.608 |
| H37Rv_KO_MbtN | -0.24 | 0.662 |
| Trans05 | 0.683 | 0.256 |
| macrophage_unactivated | 1.146 | 3.545 |
| IL1 | -0.483 | -2.394 |
| Rapamycin | -0.16 | -2.477 |
| Tcell | 0.326 | 3.812 |
| GMCSF | -0.43 | -2.376 |
| IFNab | 0.302 | -1.69 |
| IFNg | -0.593 | -2.959 |
| IFNg_GMCSF1 | -0.512 | -0.892 |
| Rv1432_day32 | 0.047 | -0.164 |
| Rv1565c_day32 | -0.074 | -1.579 |
| secA2_input | 0.277 | -0.659 |
| delta_Rv3594 | -0.867 | -3.624 |
| delta_Rv3717 | -1.553 | -2.427 |
| delta_Rv3811 | -1.835 | -3.353 |
| delta_Rv0954 | -1.292 | -2.671 |
| PonA1 | -0.851 | -2.113 |
| EccD1_KO | -0.352 | -3.003 |
| EspI_KO | 0.145 | -2.145 |
| PE35_KO | 0.0 | 1.96 |
| PPE68_KO | -0.166 | 0.669 |
| glycerol2 | 0.248 | 0.884 |
| lignocerate | -0.336 | 0.559 |
| oleate | 0.328 | 0.94 |
| phosphatidylcholine | 0.0 | 0.91 |
| acetate | 0.0 | -0.236 |
| glucAc | 0.0 | -0.259 |
| Rv0950ko | -0.546 | -3.344 |
| Rv1096ko | -1.004 | -4.083 |
| Rv3684ko | -1.267 | -2.459 |
| delta_otsA_trehalose | 0.4 | -0.55 |