TnSeqCorr

Top 10 genes with highest correlation to Rv0987/-:

update plotcorrelationlink to info on gene
Rv1676/- (cc=0.5034) info on Rv1676/-
Rv1950c/- (cc=0.4754) info on Rv1950c/-
Rv2958c/- (cc=0.4701) info on Rv2958c/-
Rv3288c/usfY (cc=0.4632) info on Rv3288c/usfY
Rv2253/- (cc=0.4501) info on Rv2253/-
Rv3643/- (cc=0.4366) info on Rv3643/-
Rv1585c/- (cc=0.4315) info on Rv1585c/-
Rv3595c/PE_PGRS59 (cc=0.4292) info on Rv3595c/PE_PGRS59
Rv1145/mmpL13a (cc=0.4285) info on Rv1145/mmpL13a
Rv3109/moaA1 (cc=0.4282) info on Rv3109/moaA1

Correlation of Rv0987/- with Rv1676/-

Normalized LFCs for Rv0987/-:
(description and provenance of datasets)
Rv0987/-Rv1676/-
Fe_supp_jason_reseq

0.601

-0.818

low_pH_jason_reseq

-0.363

0.34

NO_jason_reseq

-0.78

0.533

B6_jason_reseq

-0.745

-0.411

MHCII_jason_reseq

-0.373

0.103

Isoniazid02

-0.087

0.268

Rifampicin4

-0.601

0.726

Ethambutol3

0.0

0.039

Meropenem3

1.18

0.803

Vancomycin16

-0.411

0.99

Rv2680_day32

-0.344

-0.393

H37Rv_KO_MarP

0.356

1.507

hypoxia_3wks

0.187

0.0

hypoxia_6wks

-0.102

0.808

glycerol

-0.363

1.181

cholesterol

-0.409

-0.118

AJ

0.185

1.062

Bibs02

0.407

0.138

Bibs02c

-0.747

0.85

BL6

-0.266

-0.138

BL6a

-0.56

0.502

BXD01

-0.322

-0.695

BXD010

-0.731

-0.8

BXD011

-0.557

-0.34

BXD03

-0.709

-1.209

BXD04

0.0

-0.508

BXD05

0.299

-0.148

BXD06

-0.477

-1.465

BXD07

-0.342

-0.865

BXD08

-0.475

-1.794

BXD09

-0.397

-1.256

CAST

0.612

0.853

CCcont

0.519

0.285

DS01

0.188

1.381

DS02

-0.187

2.105

DS04

0.0

0.753

DS0c

0.173

1.425

GP01

-1.031

-0.527

GP02

0.636

0.603

GP0c

-0.569

0.16

NOD

0.234

-0.381

NZO

0.053

0.587

PWK

0.347

-0.053

H37Rv_KO_CtpC

0.804

0.309

H37Rv_KO_CtpD

1.081

2.042

H37Rv_KO_Rv1272

1.151

1.968

H37Rv_KO_SugABC

1.081

1.851

H37Rv_KO_MbtN

0.561

1.596

Trans05

-0.113

1.077

macrophage_unactivated

0.275

-1.502

IL1

-1.056

-2.966

Rapamycin

-0.285

-3.069

Tcell

-0.15

-2.704

GMCSF

-0.792

-2.64

IFNab

-0.907

-3.607

IFNg

-0.951

-3.188

IFNg_GMCSF1

-1.119

-2.13

Rv1432_day32

0.579

1.46

Rv1565c_day32

0.523

0.36

secA2_input

-0.582

-0.568

delta_Rv3594

-0.239

-0.396

delta_Rv3717

-1.305

-0.615

delta_Rv3811

-0.564

-1.981

delta_Rv0954

0.138

0.194

PonA1

0.043

0.386

EccD1_KO

0.0

1.168

EspI_KO

-0.197

1.372

PE35_KO

-0.633

1.607

PPE68_KO

-0.221

1.302

glycerol2

0.736

0.581

lignocerate

0.202

0.843

oleate

0.364

-0.163

phosphatidylcholine

0.36

0.542

acetate

-0.12

1.15

glucAc

-0.236

1.052

Rv0950ko

0.199

-1.33

Rv1096ko

-0.425

0.075

Rv3684ko

-0.226

0.0

delta_otsA_trehalose

0.866

-0.232