TnSeqCorr

Top 10 genes with highest correlation to Rv0850/-:

update plotcorrelationlink to info on gene
Rv1160/mutT2 (cc=0.7889) info on Rv1160/mutT2
Rv3395c/- (cc=0.7365) info on Rv3395c/-
Rv3354/- (cc=0.7319) info on Rv3354/-
Rv0089/- (cc=0.7232) info on Rv0089/-
Rv1974/- (cc=0.723) info on Rv1974/-
Rv1181/pks4 (cc=0.7026) info on Rv1181/pks4
Rv0887c/- (cc=0.7014) info on Rv0887c/-
Rv1378c/- (cc=0.6772) info on Rv1378c/-
Rv2633c/- (cc=0.6767) info on Rv2633c/-
Rv2028c/- (cc=0.6617) info on Rv2028c/-

Correlation of Rv0850/- with Rv3354/-

Normalized LFCs for Rv0850/-:
(description and provenance of datasets)
Rv0850/-Rv3354/-
Fe_supp_jason_reseq

-1.039

-1.138

low_pH_jason_reseq

1.621

-0.381

NO_jason_reseq

-0.575

-0.793

B6_jason_reseq

1.642

0.985

MHCII_jason_reseq

1.231

1.019

Isoniazid02

0.534

1.043

Rifampicin4

-0.671

0.125

Ethambutol3

-0.415

0.398

Meropenem3

-0.297

1.179

Vancomycin16

0.05

0.162

Rv2680_day32

0.109

0.659

H37Rv_KO_MarP

0.662

0.422

hypoxia_3wks

-1.882

-0.347

hypoxia_6wks

-0.453

-0.595

glycerol

0.638

0.674

cholesterol

-1.006

0.892

AJ

-0.047

-0.171

Bibs02

0.054

-0.029

Bibs02c

1.537

0.596

BL6

-2.459

-0.912

BL6a

0.948

-0.067

BXD01

-2.649

-1.687

BXD010

-2.697

-1.434

BXD011

-2.143

-2.812

BXD03

-2.275

-2.487

BXD04

-2.7

-1.729

BXD05

-2.834

-1.146

BXD06

-1.533

-1.932

BXD07

-3.265

-2.262

BXD08

-2.704

-1.667

BXD09

-2.959

-2.542

CAST

0.514

0.097

CCcont

-2.008

-1.82

DS01

1.009

-0.077

DS02

0.572

0.269

DS04

0.02

0.395

DS0c

-0.479

-0.597

GP01

-1.941

-1.486

GP02

-1.962

-0.295

GP0c

-0.571

-0.754

NOD

-0.361

-0.169

NZO

0.116

0.127

PWK

-0.183

0.367

H37Rv_KO_CtpC

-2.305

-0.788

H37Rv_KO_CtpD

-1.75

-1.146

H37Rv_KO_Rv1272

-2.444

-0.927

H37Rv_KO_SugABC

-0.362

-0.855

H37Rv_KO_MbtN

-2.25

-1.624

Trans05

-0.354

-0.244

macrophage_unactivated

-2.91

-1.654

IL1

-2.515

-1.649

Rapamycin

-2.179

-1.034

Tcell

-3.526

-1.473

GMCSF

-3.335

-2.118

IFNab

-2.564

-2.056

IFNg

-1.109

-0.949

IFNg_GMCSF1

-2.231

-0.641

Rv1432_day32

-1.413

0.3

Rv1565c_day32

-1.136

0.635

secA2_input

-3.397

0.645

delta_Rv3594

1.722

-0.395

delta_Rv3717

1.339

-0.21

delta_Rv3811

0.848

0.592

delta_Rv0954

2.122

0.58

PonA1

-0.274

-0.802

EccD1_KO

-1.174

1.217

EspI_KO

-0.673

1.201

PE35_KO

-1.348

0.204

PPE68_KO

-0.982

1.254

glycerol2

2.413

1.595

lignocerate

2.345

1.672

oleate

0.961

0.822

phosphatidylcholine

1.594

1.291

acetate

2.469

1.047

glucAc

1.638

1.449

Rv0950ko

-0.706

0.365

Rv1096ko

0.609

0.268

Rv3684ko

0.229

0.933

delta_otsA_trehalose

-0.4

0.808