TnSeqCorr

Top 10 genes with highest correlation to Rv0846c/-:

update plotcorrelationlink to info on gene
Rv1453/- (cc=0.6978) info on Rv1453/-
Rv2032/acg (cc=0.6387) info on Rv2032/acg
Rv3295/- (cc=0.6243) info on Rv3295/-
Rv1182/papA3 (cc=0.6159) info on Rv1182/papA3
Rv2063A/mazF7 (cc=0.5895) info on Rv2063A/mazF7
Rv2636/- (cc=0.5805) info on Rv2636/-
Rv1180/pks3 (cc=0.5801) info on Rv1180/pks3
Rv1815/- (cc=0.5732) info on Rv1815/-
Rv1843c/guaB1 (cc=0.5639) info on Rv1843c/guaB1
Rv0840c/pip (cc=0.5592) info on Rv0840c/pip

Correlation of Rv0846c/- with Rv1843c/guaB1

Normalized LFCs for Rv0846c/-:
(description and provenance of datasets)
Rv0846c/-Rv1843c/guaB1
Fe_supp_jason_reseq

-0.444

-0.403

low_pH_jason_reseq

-0.547

-0.975

NO_jason_reseq

-0.404

-0.567

B6_jason_reseq

1.345

-0.19

MHCII_jason_reseq

1.352

1.146

Isoniazid02

0.8

1.091

Rifampicin4

-0.095

0.574

Ethambutol3

0.551

0.179

Meropenem3

0.041

-0.055

Vancomycin16

0.09

-0.05

Rv2680_day32

0.29

2.007

H37Rv_KO_MarP

0.809

0.783

hypoxia_3wks

0.813

0.239

hypoxia_6wks

1.76

-0.493

glycerol

-0.856

-0.645

cholesterol

-0.157

0.017

AJ

0.598

0.862

Bibs02

0.695

-0.179

Bibs02c

0.279

-0.324

BL6

-0.501

-1.777

BL6a

-0.34

-1.212

BXD01

-0.665

-1.101

BXD010

-0.208

-1.622

BXD011

0.01

-1.358

BXD03

0.022

-1.788

BXD04

-1.062

-1.515

BXD05

0.216

-1.235

BXD06

-0.581

-1.553

BXD07

-0.724

-1.45

BXD08

-0.318

-1.506

BXD09

-0.484

-1.151

CAST

0.053

-0.052

CCcont

-1.231

-2.183

DS01

0.778

0.082

DS02

0.493

0.11

DS04

0.427

0.218

DS0c

0.035

-0.267

GP01

-0.031

-0.566

GP02

-0.715

-0.032

GP0c

-1.433

-1.036

NOD

0.495

0.913

NZO

0.452

0.974

PWK

-0.283

0.342

H37Rv_KO_CtpC

-1.151

-0.47

H37Rv_KO_CtpD

0.246

0.564

H37Rv_KO_Rv1272

0.011

-0.247

H37Rv_KO_SugABC

-0.288

-0.323

H37Rv_KO_MbtN

-0.609

-0.388

Trans05

-0.153

-0.483

macrophage_unactivated

-1.152

-1.947

IL1

-0.854

-1.314

Rapamycin

-1.059

-1.412

Tcell

-0.587

-3.193

GMCSF

-0.428

-0.948

IFNab

-0.871

-1.793

IFNg

-1.248

-1.304

IFNg_GMCSF1

-0.619

-1.376

Rv1432_day32

0.799

2.018

Rv1565c_day32

0.516

1.595

secA2_input

0.058

-0.208

delta_Rv3594

0.392

0.024

delta_Rv3717

-0.361

-0.086

delta_Rv3811

-0.427

0.262

delta_Rv0954

0.857

-0.025

PonA1

-0.675

-0.697

EccD1_KO

-0.329

-0.802

EspI_KO

0.2

-0.938

PE35_KO

1.365

-0.347

PPE68_KO

0.71

-0.582

glycerol2

0.14

-0.106

lignocerate

0.15

-1.463

oleate

0.597

-1.422

phosphatidylcholine

0.479

-0.457

acetate

-0.178

-0.451

glucAc

0.804

-1.094

Rv0950ko

-0.048

-0.277

Rv1096ko

-0.63

-0.992

Rv3684ko

-0.937

-0.55

delta_otsA_trehalose

0.803

0.625