TnSeqCorr

Top 10 genes with highest correlation to Rv0701/rplC:

update plotcorrelationlink to info on gene
Rv3673c/- (cc=0.9187) info on Rv3673c/-
Rv2678c/hemE (cc=0.799) info on Rv2678c/hemE
Rv2882c/frr (cc=0.7923) info on Rv2882c/frr
Rv2164c/- (cc=0.6902) info on Rv2164c/-
Rv3858c/gltD (cc=0.6779) info on Rv3858c/gltD
Rv2373c/dnaJ2 (cc=0.6688) info on Rv2373c/dnaJ2
Rv2611c/- (cc=0.6669) info on Rv2611c/-
Rv1177/fdxC (cc=0.6649) info on Rv1177/fdxC
Rv3753c/- (cc=0.6627) info on Rv3753c/-
Rv3456c/rplQ (cc=0.662) info on Rv3456c/rplQ

Correlation of Rv0701/rplC with Rv2373c/dnaJ2

Normalized LFCs for Rv0701/rplC:
(description and provenance of datasets)
Rv0701/rplCRv2373c/dnaJ2
Fe_supp_jason_reseq

0.0

0.0

low_pH_jason_reseq

0.0

0.0

NO_jason_reseq

0.0

0.0

B6_jason_reseq

0.0

0.0

MHCII_jason_reseq

0.0

0.0

Isoniazid02

0.0

0.0

Rifampicin4

0.0

0.0

Ethambutol3

0.0

0.0

Meropenem3

0.0

0.0

Vancomycin16

0.0

0.0

Rv2680_day32

0.0

0.0

H37Rv_KO_MarP

0.0

0.0

hypoxia_3wks

0.0

0.0

hypoxia_6wks

0.0

0.0

glycerol

0.0

0.0

cholesterol

0.0

0.0

AJ

0.0

0.0

Bibs02

0.0

0.0

Bibs02c

0.0

0.0

BL6

0.0

0.0

BL6a

0.0

0.0

BXD01

0.0

0.0

BXD010

0.0

0.0

BXD011

0.0

0.0

BXD03

0.0

0.0

BXD04

0.0

0.0

BXD05

0.0

0.0

BXD06

0.0

0.0

BXD07

0.0

0.0

BXD08

0.0

0.0

BXD09

0.0

0.0

CAST

0.0

0.0

CCcont

0.0

0.525

DS01

0.0

0.0

DS02

0.0

0.0

DS04

0.0

0.0

DS0c

0.0

0.0

GP01

0.0

0.0

GP02

0.0

0.0

GP0c

0.13

0.0

NOD

0.0

0.0

NZO

0.0

0.0

PWK

0.0

0.0

H37Rv_KO_CtpC

0.0

0.0

H37Rv_KO_CtpD

0.0

0.0

H37Rv_KO_Rv1272

0.0

0.0

H37Rv_KO_SugABC

0.0

0.0

H37Rv_KO_MbtN

0.0

0.0

Trans05

0.0

0.0

macrophage_unactivated

0.0

0.0

IL1

0.0

0.0

Rapamycin

0.0

0.0

Tcell

0.0

0.0

GMCSF

0.0

0.0

IFNab

0.0

0.0

IFNg

0.0

0.0

IFNg_GMCSF1

0.0

0.0

Rv1432_day32

0.0

0.0

Rv1565c_day32

0.0

0.0

secA2_input

1.675

-0.136

delta_Rv3594

0.0

0.0

delta_Rv3717

0.0

0.0

delta_Rv3811

0.0

0.0

delta_Rv0954

0.0

0.0

PonA1

0.0

0.0

EccD1_KO

-1.47

-1.924

EspI_KO

-1.668

-1.668

PE35_KO

-1.706

-1.304

PPE68_KO

-1.872

-1.43

glycerol2

0.0

-0.95

lignocerate

0.0

-0.826

oleate

0.0

-0.961

phosphatidylcholine

0.0

-0.95

acetate

0.0

0.652

glucAc

0.0

1.328

Rv0950ko

0.0

0.0

Rv1096ko

0.0

0.0

Rv3684ko

0.0

0.0

delta_otsA_trehalose

0.254

-0.103