Top 10 genes with highest correlation to Rv0654/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv2590/fadD9 | (cc=0.6053) | info on Rv2590/fadD9 |
| Rv2495c/bkdC | (cc=0.5864) | info on Rv2495c/bkdC |
| Rv2770c/PPE44 | (cc=0.5132) | info on Rv2770c/PPE44 |
| Rv1844c/gnd1 | (cc=0.5072) | info on Rv1844c/gnd1 |
| Rv3440c/- | (cc=0.4989) | info on Rv3440c/- |
| Rv3558/PPE64 | (cc=0.4858) | info on Rv3558/PPE64 |
| Rv0222/echA1 | (cc=0.4802) | info on Rv0222/echA1 |
| Rv0826/- | (cc=0.4795) | info on Rv0826/- |
| Rv0281/- | (cc=0.4727) | info on Rv0281/- |
| Rv2579/dhaA | (cc=0.4699) | info on Rv2579/dhaA |
Correlation of Rv0654/- with Rv2495c/bkdC
Normalized LFCs for Rv0654/-:
(description and provenance of datasets)
| Rv0654/- | Rv2495c/bkdC | |
| Fe_supp_jason_reseq | -1.487 | -5.05 |
| low_pH_jason_reseq | -2.16 | -5.352 |
| NO_jason_reseq | 0.706 | 0.252 |
| B6_jason_reseq | -0.841 | -2.921 |
| MHCII_jason_reseq | -0.807 | -2.608 |
| Isoniazid02 | 0.458 | 0.333 |
| Rifampicin4 | -0.263 | -1.652 |
| Ethambutol3 | 1.187 | -0.332 |
| Meropenem3 | 0.234 | -0.061 |
| Vancomycin16 | -0.308 | 0.0 |
| Rv2680_day32 | 0.07 | -0.168 |
| H37Rv_KO_MarP | 0.114 | 0.769 |
| hypoxia_3wks | -0.144 | 0.263 |
| hypoxia_6wks | 0.169 | 0.069 |
| glycerol | -0.361 | -0.628 |
| cholesterol | -0.111 | 0.684 |
| AJ | 0.435 | -0.914 |
| Bibs02 | 0.122 | -1.495 |
| Bibs02c | 0.426 | 0.735 |
| BL6 | 0.212 | -0.869 |
| BL6a | -0.095 | 0.973 |
| BXD01 | 0.139 | 0.0 |
| BXD010 | -0.658 | -0.622 |
| BXD011 | 0.296 | 0.448 |
| BXD03 | -0.278 | 1.318 |
| BXD04 | 0.053 | 0.78 |
| BXD05 | -0.428 | 0.078 |
| BXD06 | -0.155 | 0.441 |
| BXD07 | -0.152 | -0.375 |
| BXD08 | 0.054 | 0.702 |
| BXD09 | -0.216 | 0.232 |
| CAST | 0.309 | -0.537 |
| CCcont | -0.22 | -0.797 |
| DS01 | 0.327 | 0.204 |
| DS02 | 0.249 | 0.52 |
| DS04 | 0.627 | 1.159 |
| DS0c | 0.547 | 1.538 |
| GP01 | 0.208 | 0.085 |
| GP02 | 0.613 | -0.797 |
| GP0c | 0.129 | -0.903 |
| NOD | 0.693 | -0.986 |
| NZO | 0.081 | -0.186 |
| PWK | 0.08 | 0.222 |
| H37Rv_KO_CtpC | -0.213 | 0.5 |
| H37Rv_KO_CtpD | 0.051 | 0.333 |
| H37Rv_KO_Rv1272 | 0.049 | 0.434 |
| H37Rv_KO_SugABC | 0.384 | -0.877 |
| H37Rv_KO_MbtN | 0.231 | -0.32 |
| Trans05 | -0.465 | 1.474 |
| macrophage_unactivated | 0.391 | 0.994 |
| IL1 | 0.297 | 1.258 |
| Rapamycin | 0.319 | 0.697 |
| Tcell | -0.456 | 0.74 |
| GMCSF | 0.684 | -0.19 |
| IFNab | -0.027 | -0.109 |
| IFNg | 0.425 | 0.358 |
| IFNg_GMCSF1 | 0.277 | 0.217 |
| Rv1432_day32 | 0.489 | 0.0 |
| Rv1565c_day32 | -0.024 | -0.395 |
| secA2_input | 0.352 | -0.611 |
| delta_Rv3594 | -0.148 | -0.561 |
| delta_Rv3717 | -0.277 | -0.076 |
| delta_Rv3811 | -0.058 | -0.546 |
| delta_Rv0954 | 0.318 | -0.078 |
| PonA1 | -0.373 | -0.874 |
| EccD1_KO | 0.151 | -0.898 |
| EspI_KO | -0.183 | -1.962 |
| PE35_KO | -0.694 | -0.709 |
| PPE68_KO | -0.761 | -0.246 |
| glycerol2 | 0.773 | -0.68 |
| lignocerate | 0.561 | -0.591 |
| oleate | 0.851 | 0.142 |
| phosphatidylcholine | 0.664 | -0.398 |
| acetate | -0.351 | -1.197 |
| glucAc | -0.288 | -1.535 |
| Rv0950ko | 0.627 | 0.754 |
| Rv1096ko | 0.715 | 1.221 |
| Rv3684ko | 0.413 | 1.608 |
| delta_otsA_trehalose | -0.301 | -1.661 |