TnSeqCorr

Top 10 genes with highest correlation to Rv0546c/-:

update plotcorrelationlink to info on gene
Rv1313c/- (cc=0.5595) info on Rv1313c/-
Rv3798/- (cc=0.5069) info on Rv3798/-
Rv2270/lppN (cc=0.4793) info on Rv2270/lppN
Rv0984/moaB2 (cc=0.4719) info on Rv0984/moaB2
Rv0544c/- (cc=0.4714) info on Rv0544c/-
Rv0540/- (cc=0.4686) info on Rv0540/-
Rv0428c/- (cc=0.4496) info on Rv0428c/-
Rv2232/ptkA (cc=0.4481) info on Rv2232/ptkA
Rv1773c/- (cc=0.4476) info on Rv1773c/-
Rv1042c/- (cc=0.4453) info on Rv1042c/-

Correlation of Rv0546c/- with Rv1773c/-

Normalized LFCs for Rv0546c/-:
(description and provenance of datasets)
Rv0546c/-Rv1773c/-
Fe_supp_jason_reseq

-0.085

-0.237

low_pH_jason_reseq

-1.691

-1.643

NO_jason_reseq

-0.318

-0.142

B6_jason_reseq

0.345

0.431

MHCII_jason_reseq

0.193

0.339

Isoniazid02

0.016

-0.08

Rifampicin4

1.614

0.352

Ethambutol3

0.377

0.331

Meropenem3

0.714

0.877

Vancomycin16

1.244

0.411

Rv2680_day32

-0.721

-0.134

H37Rv_KO_MarP

-0.158

-0.656

hypoxia_3wks

1.998

0.534

hypoxia_6wks

1.422

-0.522

glycerol

1.352

-0.054

cholesterol

1.157

-0.191

AJ

-0.012

0.326

Bibs02

0.307

-1.025

Bibs02c

1.084

0.638

BL6

-0.634

-2.082

BL6a

0.673

-0.017

BXD01

-0.339

-0.133

BXD010

-0.396

-0.082

BXD011

1.404

0.471

BXD03

-0.211

-0.55

BXD04

0.295

-0.163

BXD05

0.371

-0.261

BXD06

-0.073

0.08

BXD07

-0.576

0.467

BXD08

-0.374

0.0

BXD09

-0.677

0.0

CAST

0.279

0.0

CCcont

-0.251

-2.36

DS01

-0.31

-0.287

DS02

0.698

-0.745

DS04

-0.614

0.901

DS0c

-0.011

-0.539

GP01

0.293

-0.615

GP02

0.027

-0.152

GP0c

-0.178

-0.295

NOD

0.693

0.801

NZO

-0.646

-0.146

PWK

0.719

-0.279

H37Rv_KO_CtpC

-1.051

-0.537

H37Rv_KO_CtpD

0.207

-0.142

H37Rv_KO_Rv1272

-0.844

-0.668

H37Rv_KO_SugABC

-0.412

0.213

H37Rv_KO_MbtN

1.01

-0.292

Trans05

-0.709

0.345

macrophage_unactivated

-1.376

-0.524

IL1

-1.688

-0.653

Rapamycin

-1.252

0.752

Tcell

-0.736

-0.316

GMCSF

0.026

0.716

IFNab

0.644

0.363

IFNg

-0.77

-0.043

IFNg_GMCSF1

-2.093

-0.358

Rv1432_day32

1.572

0.802

Rv1565c_day32

-1.366

0.477

secA2_input

-0.308

1.234

delta_Rv3594

1.574

1.475

delta_Rv3717

1.432

1.456

delta_Rv3811

1.459

0.5

delta_Rv0954

0.381

0.174

PonA1

0.304

1.26

EccD1_KO

1.296

1.552

EspI_KO

1.417

0.257

PE35_KO

2.1

0.744

PPE68_KO

2.019

1.347

glycerol2

0.408

-0.566

lignocerate

0.023

-1.204

oleate

-1.141

0.132

phosphatidylcholine

-0.563

-0.377

acetate

-0.527

-0.946

glucAc

-0.61

-1.891

Rv0950ko

0.121

1.484

Rv1096ko

0.754

1.885

Rv3684ko

1.087

1.834

delta_otsA_trehalose

0.658

0.063