Top 10 genes with highest correlation to Rv0546c/-:
| update plot | correlation | link to info on gene |
|---|---|---|
| Rv1313c/- | (cc=0.5595) | info on Rv1313c/- |
| Rv3798/- | (cc=0.5069) | info on Rv3798/- |
| Rv2270/lppN | (cc=0.4793) | info on Rv2270/lppN |
| Rv0984/moaB2 | (cc=0.4719) | info on Rv0984/moaB2 |
| Rv0544c/- | (cc=0.4714) | info on Rv0544c/- |
| Rv0540/- | (cc=0.4686) | info on Rv0540/- |
| Rv0428c/- | (cc=0.4496) | info on Rv0428c/- |
| Rv2232/ptkA | (cc=0.4481) | info on Rv2232/ptkA |
| Rv1773c/- | (cc=0.4476) | info on Rv1773c/- |
| Rv1042c/- | (cc=0.4453) | info on Rv1042c/- |
Correlation of Rv0546c/- with Rv0428c/-
Normalized LFCs for Rv0546c/-:
(description and provenance of datasets)
| Rv0546c/- | Rv0428c/- | |
| Fe_supp_jason_reseq | -0.085 | -0.09 |
| low_pH_jason_reseq | -1.691 | -1.191 |
| NO_jason_reseq | -0.318 | -2.987 |
| B6_jason_reseq | 0.345 | -0.13 |
| MHCII_jason_reseq | 0.193 | 0.189 |
| Isoniazid02 | 0.016 | 0.237 |
| Rifampicin4 | 1.614 | 0.336 |
| Ethambutol3 | 0.377 | 0.499 |
| Meropenem3 | 0.714 | 1.198 |
| Vancomycin16 | 1.244 | 0.276 |
| Rv2680_day32 | -0.721 | -0.979 |
| H37Rv_KO_MarP | -0.158 | 0.231 |
| hypoxia_3wks | 1.998 | -0.475 |
| hypoxia_6wks | 1.422 | -1.203 |
| glycerol | 1.352 | 1.201 |
| cholesterol | 1.157 | 1.063 |
| AJ | -0.012 | -0.766 |
| Bibs02 | 0.307 | 0.036 |
| Bibs02c | 1.084 | 0.196 |
| BL6 | -0.634 | -1.752 |
| BL6a | 0.673 | -0.452 |
| BXD01 | -0.339 | -2.035 |
| BXD010 | -0.396 | -1.421 |
| BXD011 | 1.404 | -1.785 |
| BXD03 | -0.211 | -2.685 |
| BXD04 | 0.295 | -1.12 |
| BXD05 | 0.371 | -2.507 |
| BXD06 | -0.073 | -1.821 |
| BXD07 | -0.576 | -1.577 |
| BXD08 | -0.374 | -1.235 |
| BXD09 | -0.677 | -2.078 |
| CAST | 0.279 | -0.554 |
| CCcont | -0.251 | -1.284 |
| DS01 | -0.31 | -0.719 |
| DS02 | 0.698 | -0.633 |
| DS04 | -0.614 | -1.041 |
| DS0c | -0.011 | -0.368 |
| GP01 | 0.293 | -0.453 |
| GP02 | 0.027 | 0.055 |
| GP0c | -0.178 | -0.558 |
| NOD | 0.693 | -1.098 |
| NZO | -0.646 | -0.142 |
| PWK | 0.719 | -0.139 |
| H37Rv_KO_CtpC | -1.051 | 0.42 |
| H37Rv_KO_CtpD | 0.207 | -2.221 |
| H37Rv_KO_Rv1272 | -0.844 | -0.374 |
| H37Rv_KO_SugABC | -0.412 | -1.637 |
| H37Rv_KO_MbtN | 1.01 | -0.235 |
| Trans05 | -0.709 | -1.124 |
| macrophage_unactivated | -1.376 | -2.484 |
| IL1 | -1.688 | -2.091 |
| Rapamycin | -1.252 | -1.55 |
| Tcell | -0.736 | -2.297 |
| GMCSF | 0.026 | -2.004 |
| IFNab | 0.644 | -1.817 |
| IFNg | -0.77 | -2.587 |
| IFNg_GMCSF1 | -2.093 | -1.515 |
| Rv1432_day32 | 1.572 | -0.64 |
| Rv1565c_day32 | -1.366 | -0.687 |
| secA2_input | -0.308 | 0.03 |
| delta_Rv3594 | 1.574 | -0.987 |
| delta_Rv3717 | 1.432 | -1.632 |
| delta_Rv3811 | 1.459 | -1.08 |
| delta_Rv0954 | 0.381 | -0.671 |
| PonA1 | 0.304 | 0.949 |
| EccD1_KO | 1.296 | 1.595 |
| EspI_KO | 1.417 | 1.463 |
| PE35_KO | 2.1 | 0.528 |
| PPE68_KO | 2.019 | 0.739 |
| glycerol2 | 0.408 | -0.38 |
| lignocerate | 0.023 | -0.575 |
| oleate | -1.141 | -0.133 |
| phosphatidylcholine | -0.563 | -0.661 |
| acetate | -0.527 | -1.516 |
| glucAc | -0.61 | -0.821 |
| Rv0950ko | 0.121 | -1.086 |
| Rv1096ko | 0.754 | 1.179 |
| Rv3684ko | 1.087 | 0.18 |
| delta_otsA_trehalose | 0.658 | -1.057 |