TnSeqCorr

Top 10 genes with highest correlation to Rv0546c/-:

update plotcorrelationlink to info on gene
Rv1313c/- (cc=0.5595) info on Rv1313c/-
Rv3798/- (cc=0.5069) info on Rv3798/-
Rv2270/lppN (cc=0.4793) info on Rv2270/lppN
Rv0984/moaB2 (cc=0.4719) info on Rv0984/moaB2
Rv0544c/- (cc=0.4714) info on Rv0544c/-
Rv0540/- (cc=0.4686) info on Rv0540/-
Rv0428c/- (cc=0.4496) info on Rv0428c/-
Rv2232/ptkA (cc=0.4481) info on Rv2232/ptkA
Rv1773c/- (cc=0.4476) info on Rv1773c/-
Rv1042c/- (cc=0.4453) info on Rv1042c/-

Correlation of Rv0546c/- with Rv1313c/-

Normalized LFCs for Rv0546c/-:
(description and provenance of datasets)
Rv0546c/-Rv1313c/-
Fe_supp_jason_reseq

-0.085

-0.309

low_pH_jason_reseq

-1.691

-0.36

NO_jason_reseq

-0.318

0.315

B6_jason_reseq

0.345

-0.261

MHCII_jason_reseq

0.193

0.267

Isoniazid02

0.016

0.157

Rifampicin4

1.614

0.563

Ethambutol3

0.377

0.985

Meropenem3

0.714

0.174

Vancomycin16

1.244

0.106

Rv2680_day32

-0.721

-0.277

H37Rv_KO_MarP

-0.158

-0.062

hypoxia_3wks

1.998

0.447

hypoxia_6wks

1.422

-0.031

glycerol

1.352

0.707

cholesterol

1.157

0.404

AJ

-0.012

0.753

Bibs02

0.307

0.37

Bibs02c

1.084

0.25

BL6

-0.634

-0.355

BL6a

0.673

0.174

BXD01

-0.339

0.09

BXD010

-0.396

0.032

BXD011

1.404

0.971

BXD03

-0.211

0.168

BXD04

0.295

-0.233

BXD05

0.371

-0.106

BXD06

-0.073

-0.091

BXD07

-0.576

0.454

BXD08

-0.374

0.269

BXD09

-0.677

-0.158

CAST

0.279

0.532

CCcont

-0.251

-0.185

DS01

-0.31

-0.135

DS02

0.698

0.25

DS04

-0.614

0.433

DS0c

-0.011

0.346

GP01

0.293

0.735

GP02

0.027

0.133

GP0c

-0.178

-0.605

NOD

0.693

0.591

NZO

-0.646

0.108

PWK

0.719

0.784

H37Rv_KO_CtpC

-1.051

0.194

H37Rv_KO_CtpD

0.207

-0.738

H37Rv_KO_Rv1272

-0.844

0.212

H37Rv_KO_SugABC

-0.412

1.0

H37Rv_KO_MbtN

1.01

1.437

Trans05

-0.709

0.15

macrophage_unactivated

-1.376

-0.328

IL1

-1.688

0.039

Rapamycin

-1.252

-0.577

Tcell

-0.736

-1.157

GMCSF

0.026

-0.187

IFNab

0.644

-0.484

IFNg

-0.77

-0.208

IFNg_GMCSF1

-2.093

-0.437

Rv1432_day32

1.572

0.267

Rv1565c_day32

-1.366

-0.016

secA2_input

-0.308

0.028

delta_Rv3594

1.574

0.86

delta_Rv3717

1.432

0.792

delta_Rv3811

1.459

0.836

delta_Rv0954

0.381

0.416

PonA1

0.304

0.392

EccD1_KO

1.296

0.345

EspI_KO

1.417

0.63

PE35_KO

2.1

1.105

PPE68_KO

2.019

0.765

glycerol2

0.408

-0.447

lignocerate

0.023

-0.462

oleate

-1.141

-0.763

phosphatidylcholine

-0.563

-0.482

acetate

-0.527

-0.188

glucAc

-0.61

0.493

Rv0950ko

0.121

0.534

Rv1096ko

0.754

0.407

Rv3684ko

1.087

0.442

delta_otsA_trehalose

0.658

-0.119