TnSeqCorr

Top 10 genes with highest correlation to Rv0544c/-:

update plotcorrelationlink to info on gene
Rv0545c/pitA (cc=0.8747) info on Rv0545c/pitA
Rv1339/- (cc=0.6428) info on Rv1339/-
Rv1008/tatD (cc=0.5885) info on Rv1008/tatD
Rv0019c/fhaB (cc=0.5848) info on Rv0019c/fhaB
Rv1780/- (cc=0.5803) info on Rv1780/-
Rv1640c/lysX (cc=0.5755) info on Rv1640c/lysX
Rv2841c/nusA (cc=0.5742) info on Rv2841c/nusA
Rv3821/- (cc=0.5447) info on Rv3821/-
Rv1058/fadD14 (cc=0.5411) info on Rv1058/fadD14
Rv0238/- (cc=0.5386) info on Rv0238/-

Correlation of Rv0544c/- with Rv0545c/pitA

Normalized LFCs for Rv0544c/-:
(description and provenance of datasets)
Rv0544c/-Rv0545c/pitA
Fe_supp_jason_reseq

-1.268

-1.323

low_pH_jason_reseq

-1.909

-1.251

NO_jason_reseq

-1.352

-0.281

B6_jason_reseq

-1.389

-1.496

MHCII_jason_reseq

-2.092

-2.253

Isoniazid02

1.737

0.327

Rifampicin4

1.985

1.852

Ethambutol3

2.494

2.309

Meropenem3

-0.883

-0.543

Vancomycin16

1.202

1.51

Rv2680_day32

1.357

1.535

H37Rv_KO_MarP

-0.49

-0.409

hypoxia_3wks

2.377

2.536

hypoxia_6wks

1.967

2.297

glycerol

3.296

1.556

cholesterol

0.784

1.387

AJ

-1.282

-1.913

Bibs02

-0.505

-1.24

Bibs02c

-0.577

-0.988

BL6

-1.054

0.058

BL6a

1.072

-0.047

BXD01

1.487

0.744

BXD010

1.207

0.502

BXD011

1.554

0.997

BXD03

0.295

0.031

BXD04

0.232

0.968

BXD05

1.689

1.082

BXD06

1.051

0.523

BXD07

1.162

0.953

BXD08

0.425

0.408

BXD09

0.68

0.406

CAST

-1.94

-1.668

CCcont

1.123

1.485

DS01

-0.231

-1.116

DS02

-0.124

-0.654

DS04

-0.734

-0.645

DS0c

-0.94

-1.904

GP01

0.524

1.292

GP02

0.816

0.797

GP0c

0.733

1.451

NOD

-1.627

-2.232

NZO

-1.371

-1.982

PWK

-1.495

-2.347

H37Rv_KO_CtpC

-0.093

0.554

H37Rv_KO_CtpD

0.754

-0.094

H37Rv_KO_Rv1272

1.23

-0.296

H37Rv_KO_SugABC

1.435

0.466

H37Rv_KO_MbtN

1.603

2.907

Trans05

1.718

0.228

macrophage_unactivated

-1.184

0.167

IL1

-3.675

-2.966

Rapamycin

-4.367

-2.547

Tcell

-1.222

-1.274

GMCSF

-2.213

-1.096

IFNab

-0.723

0.656

IFNg

-2.673

-1.515

IFNg_GMCSF1

-4.682

-2.316

Rv1432_day32

1.531

1.248

Rv1565c_day32

-1.76

-1.767

secA2_input

-0.28

0.235

delta_Rv3594

3.87

3.341

delta_Rv3717

3.152

2.665

delta_Rv3811

3.297

2.822

delta_Rv0954

0.866

0.811

PonA1

-0.759

-1.154

EccD1_KO

-1.687

-1.697

EspI_KO

-1.124

-0.094

PE35_KO

-1.773

-1.835

PPE68_KO

-1.456

-2.013

glycerol2

-0.524

-0.964

lignocerate

-1.784

-1.28

oleate

-1.466

-1.49

phosphatidylcholine

-2.284

-2.053

acetate

-0.773

0.831

glucAc

1.173

0.099

Rv0950ko

0.407

-0.193

Rv1096ko

-0.103

0.32

Rv3684ko

1.497

0.393

delta_otsA_trehalose

1.175

-0.671