TnSeqCorr

Top 10 genes with highest correlation to Rv0497/-:

update plotcorrelationlink to info on gene
Rv1836c/- (cc=0.6274) info on Rv1836c/-
Rv3854c/ethA (cc=0.6185) info on Rv3854c/ethA
Rv1821/secA2 (cc=0.6117) info on Rv1821/secA2
Rv1111c/- (cc=0.6082) info on Rv1111c/-
Rv2190c/- (cc=0.5803) info on Rv2190c/-
Rv2696c/- (cc=0.529) info on Rv2696c/-
Rv0385/- (cc=0.5272) info on Rv0385/-
Rv3207c/- (cc=0.52) info on Rv3207c/-
Rv2553c/- (cc=0.5089) info on Rv2553c/-
Rv0049/- (cc=0.4992) info on Rv0049/-

Correlation of Rv0497/- with Rv1836c/-

Normalized LFCs for Rv0497/-:
(description and provenance of datasets)
Rv0497/-Rv1836c/-
Fe_supp_jason_reseq

2.155

3.703

low_pH_jason_reseq

-1.887

-0.44

NO_jason_reseq

0.858

-0.69

B6_jason_reseq

-1.375

-0.292

MHCII_jason_reseq

-1.155

0.492

Isoniazid02

-1.622

-2.187

Rifampicin4

-1.66

-2.943

Ethambutol3

-0.19

-1.216

Meropenem3

-1.154

-1.533

Vancomycin16

-2.555

-2.653

Rv2680_day32

1.148

1.226

H37Rv_KO_MarP

-3.88

-6.0

hypoxia_3wks

-1.244

-0.961

hypoxia_6wks

-1.038

-0.503

glycerol

-1.24

-0.202

cholesterol

0.748

0.253

AJ

0.487

-0.232

Bibs02

-0.697

-0.183

Bibs02c

-1.773

-0.209

BL6

0.731

1.02

BL6a

-0.755

1.339

BXD01

0.209

1.272

BXD010

0.518

0.323

BXD011

0.54

1.988

BXD03

0.377

0.341

BXD04

0.524

0.563

BXD05

-0.354

1.21

BXD06

0.248

0.523

BXD07

0.786

0.865

BXD08

-0.4

1.248

BXD09

0.622

0.95

CAST

-2.853

0.21

CCcont

1.016

2.888

DS01

-1.001

-0.236

DS02

-0.129

-0.217

DS04

-0.115

0.883

DS0c

-0.826

0.0

GP01

1.52

0.964

GP02

-0.025

1.165

GP0c

1.579

1.002

NOD

-2.39

-0.225

NZO

0.727

-0.199

PWK

2.552

-0.196

H37Rv_KO_CtpC

0.092

0.739

H37Rv_KO_CtpD

0.235

0.918

H37Rv_KO_Rv1272

0.824

0.953

H37Rv_KO_SugABC

2.212

1.362

H37Rv_KO_MbtN

3.528

1.116

Trans05

1.205

1.066

macrophage_unactivated

-0.514

0.669

IL1

0.703

0.0

Rapamycin

0.157

0.227

Tcell

-2.346

0.0

GMCSF

1.31

0.38

IFNab

2.53

1.844

IFNg

0.136

1.058

IFNg_GMCSF1

1.618

0.452

Rv1432_day32

2.092

1.748

Rv1565c_day32

-1.93

0.0

secA2_input

-2.038

-2.174

delta_Rv3594

1.086

2.695

delta_Rv3717

2.536

3.555

delta_Rv3811

0.828

2.842

delta_Rv0954

-0.282

-1.461

PonA1

-0.912

-1.387

EccD1_KO

-0.109

0.148

EspI_KO

-0.719

-0.051

PE35_KO

-1.485

-1.496

PPE68_KO

-0.806

0.0

glycerol2

-0.177

-0.193

lignocerate

-0.32

-0.168

oleate

0.457

-0.196

phosphatidylcholine

-0.176

-0.193

acetate

0.0

0.0

glucAc

0.119

-0.143

Rv0950ko

-0.615

-6.0

Rv1096ko

0.305

-0.03

Rv3684ko

-0.157

1.677

delta_otsA_trehalose

-0.118

-0.288